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Chlorine in PDB 4fvs: Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution, PDB code: 4fvs was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 2.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 140.860, 154.510, 72.640, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution (pdb code 4fvs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution, PDB code: 4fvs:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4fvs

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Chlorine binding site 1 out of 4 in the Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:88.1
occ:1.00
NH1 C:ARG152 2.9 96.0 1.0
CD1 C:TYR147 4.1 59.7 1.0
CZ C:ARG152 4.2 0.8 1.0
CG C:TYR147 4.3 59.1 1.0
CE1 C:TYR147 4.4 61.4 1.0
CG C:LYS145 4.4 70.2 1.0
CD2 C:TYR147 4.7 61.2 1.0
CG2 C:THR118 4.7 67.7 1.0
CD C:ARG152 4.7 95.1 1.0
CZ C:TYR147 4.8 68.2 1.0
CB C:TYR147 4.8 58.2 1.0
CG C:ARG152 4.8 78.5 1.0
CB C:LYS145 4.9 66.1 1.0
CE2 C:TYR147 4.9 62.2 1.0
NE C:ARG152 4.9 0.1 1.0

Chlorine binding site 2 out of 4 in 4fvs

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Chlorine binding site 2 out of 4 in the Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:95.5
occ:1.00
NZ C:LYS99 3.1 58.2 1.0
OD1 C:ASP116 3.9 71.3 1.0
CE C:LYS99 4.2 56.4 1.0
O C:ASP84 4.3 59.0 1.0
OD1 C:ASP84 4.6 73.0 1.0
O C:ILE117 4.7 66.7 1.0
OD2 C:ASP116 4.8 75.0 1.0
CG C:ASP116 4.8 73.4 1.0
O C:HOH403 5.0 39.0 1.0
OD2 C:ASP97 5.0 57.0 1.0

Chlorine binding site 3 out of 4 in 4fvs

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Chlorine binding site 3 out of 4 in the Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:73.4
occ:1.00
NH1 D:ARG152 3.1 64.6 1.0
CB E:PHE121 3.8 48.5 1.0
CD1 D:TYR147 3.9 36.3 1.0
CD D:LYS145 4.0 46.8 1.0
CD2 E:PHE121 4.0 53.0 1.0
CG D:TYR147 4.1 35.8 1.0
N E:PHE121 4.1 48.1 1.0
CE1 D:TYR147 4.2 34.4 1.0
OH E:TYR88 4.3 59.9 1.0
O E:PHE121 4.3 51.4 1.0
CZ D:ARG152 4.4 68.3 1.0
CG E:PHE121 4.4 50.8 1.0
CA E:PHE121 4.5 46.5 1.0
CD2 D:TYR147 4.5 38.2 1.0
CB D:TYR147 4.5 36.0 1.0
CG2 D:THR118 4.7 49.2 1.0
CZ D:TYR147 4.7 42.1 1.0
CG D:LYS145 4.8 38.5 1.0
CE2 D:TYR147 4.8 39.2 1.0
CD D:ARG152 4.8 54.9 1.0
C E:PHE121 4.9 50.0 1.0
OE2 E:GLU119 4.9 80.5 1.0
CG D:ARG152 4.9 38.5 1.0

Chlorine binding site 4 out of 4 in 4fvs

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Chlorine binding site 4 out of 4 in the Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Putative Lipoprotein (BDI_3050) From Parabacteroides Distasonis Atcc 8503 at 2.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl301

b:70.3
occ:1.00
O F:THR177 3.3 72.1 1.0
NZ D:LYS184 3.3 77.4 1.0
N F:THR177 3.5 68.2 1.0
CE D:LYS184 3.8 79.7 1.0
CZ D:TYR201 3.8 62.7 1.0
CE2 D:TYR201 3.9 54.3 1.0
CA F:GLY176 4.0 68.5 1.0
CE1 D:TYR201 4.0 49.0 1.0
OH D:TYR201 4.1 64.0 1.0
C F:THR177 4.2 70.6 1.0
C F:GLY176 4.2 72.8 1.0
CD2 D:TYR201 4.3 50.8 1.0
OH D:TYR203 4.4 67.0 1.0
CA F:THR177 4.4 67.9 1.0
CD1 D:TYR201 4.4 48.8 1.0
OD1 D:ASN222 4.4 79.4 1.0
CG D:TYR201 4.5 47.4 1.0
CD D:LYS184 4.7 69.1 1.0
O F:ALA175 4.8 74.7 1.0
CE2 F:PHE178 4.8 62.1 1.0
CB F:THR177 4.9 74.4 1.0
CZ F:PHE178 5.0 61.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 15:25:54 2025

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