Atomistry » Chlorine » PDB 4g81-4gen » 4gd5
Atomistry »
  Chlorine »
    PDB 4g81-4gen »
      4gd5 »

Chlorine in PDB 4gd5: X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens

Protein crystallography data

The structure of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens, PDB code: 4gd5 was solved by J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, W.F.Anderson, A.Savchenko, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.07 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.888, 73.302, 56.415, 90.00, 102.09, 90.00
R / Rfree (%) 15 / 18.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens (pdb code 4gd5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens, PDB code: 4gd5:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 1 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:31.8
occ:1.00
O A:HOH569 2.9 41.1 1.0
O A:HOH570 3.2 33.4 1.0
N A:ASP157 3.3 16.9 1.0
O B:HOH681 3.6 39.3 1.0
O A:HOH547 3.8 30.8 1.0
CA A:GLU156 3.8 12.8 1.0
CG2 A:ILE182 3.9 19.9 1.0
CB A:GLU156 4.0 14.0 1.0
CB A:ASP157 4.0 20.9 1.0
C A:GLU156 4.0 16.1 1.0
CA A:ASP157 4.2 16.9 1.0
NH1 A:ARG162 4.7 15.3 1.0
O A:HOH700 4.7 44.4 1.0
CG1 A:ILE182 4.8 18.0 1.0
CB A:ILE182 4.9 16.9 1.0

Chlorine binding site 2 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 2 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:23.9
occ:1.00
CG A:GLN98 3.7 31.3 1.0
CA A:GLN98 4.1 22.5 1.0
CB A:GLN98 4.3 24.4 1.0
N A:GLN98 4.7 20.8 1.0
CD A:GLN98 4.8 45.7 1.0
NE2 A:GLN98 4.8 30.5 1.0

Chlorine binding site 3 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 3 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:14.5
occ:1.00
O B:HOH624 2.8 35.4 1.0
O B:HOH564 3.1 14.9 1.0
N B:ASP61 3.2 19.0 1.0
CB B:ASP61 3.4 24.6 1.0
C B:LYS59 3.6 18.7 1.0
CA B:LYS59 3.7 15.5 1.0
N B:PRO60 3.7 16.1 1.0
CA B:ASP61 3.8 20.5 1.0
CD B:LYS59 3.9 30.7 1.0
CB B:LYS59 4.0 17.1 1.0
CD B:PRO60 4.0 17.9 1.0
O B:LYS59 4.2 19.1 1.0
C B:PRO60 4.3 22.0 1.0
C B:ASP61 4.4 23.5 1.0
N B:VAL62 4.4 18.2 1.0
CA B:PRO60 4.5 16.2 1.0
CG2 B:VAL62 4.6 20.4 1.0
CG B:LYS59 4.6 26.2 1.0
CG B:ASP61 4.8 49.5 1.0

Chlorine binding site 4 out of 4 in 4gd5

Go back to Chlorine Binding Sites List in 4gd5
Chlorine binding site 4 out of 4 in the X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:26.8
occ:1.00
O B:HOH652 2.9 48.9 1.0
CG B:GLN98 3.7 36.0 1.0
CA B:GLN98 4.1 21.2 1.0
CB B:GLN98 4.2 23.4 1.0
N B:GLN98 4.6 19.5 1.0
CD B:GLN98 4.8 49.6 1.0
NE2 B:GLN98 4.9 26.3 1.0

Reference:

J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectiousdiseases. X-Ray Crystal Structure of A Putative Phosphate Abc Transporter Substrate-Binding Protein with Bound Phosphate From Clostridium Perfringens To Be Published.
Page generated: Fri Jul 11 15:36:56 2025

Last articles

Mg in 6LTU
Mg in 6LTV
Mg in 6LTR
Mg in 6LSN
Mg in 6LTG
Mg in 6LTI
Mg in 6LSM
Mg in 6LS4
Mg in 6LS5
Mg in 6LPE
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy