Atomistry » Chlorine » PDB 4gm6-4gt9 » 4gnv
Atomistry »
  Chlorine »
    PDB 4gm6-4gt9 »
      4gnv »

Chlorine in PDB 4gnv: Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine

Enzymatic activity of Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine

All present enzymatic activity of Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine:
3.2.1.52;

Protein crystallography data

The structure of Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine, PDB code: 4gnv was solved by Ssgcid, Seattle Structural Genomics Center For Infectious Disease(Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.12 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.970, 89.310, 67.150, 90.00, 91.73, 90.00
R / Rfree (%) 14.8 / 17.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine (pdb code 4gnv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine, PDB code: 4gnv:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4gnv

Go back to Chlorine Binding Sites List in 4gnv
Chlorine binding site 1 out of 4 in the Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:10.0
occ:1.00
 O A:HOH710 3.2 25.0 1.0
OG1 A:THR47 3.3 10.6 1.0
O A:HOH534 3.5 15.2 1.0
CB A:THR47 3.8 10.2 1.0
O A:ARG43 3.8 10.1 1.0
CA A:ALA44 4.0 10.4 1.0
C A:ARG43 4.0 10.2 1.0
N A:ALA44 4.0 10.3 1.0
CD1 A:TRP321 4.1 13.5 1.0
CG2 A:THR47 4.2 11.9 1.0
CB A:ARG43 4.2 10.5 1.0
O A:HOH629 4.4 28.4 1.0
CB A:ALA44 4.7 11.0 1.0
O A:HOH607 4.8 18.7 1.0
CA A:ARG43 4.8 10.3 1.0
CG A:TRP321 4.8 13.4 1.0
CB A:TRP321 4.8 13.9 1.0
O A:ALA116 4.9 10.6 1.0

Chlorine binding site 2 out of 4 in 4gnv

Go back to Chlorine Binding Sites List in 4gnv
Chlorine binding site 2 out of 4 in the Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:10.1
occ:1.00
 O A:HOH640 3.0 25.2 1.0
O A:HOH574 3.1 11.4 1.0
NE2 A:GLN332 3.7 26.9 1.0
CG A:GLN332 3.8 19.4 1.0
CD A:GLN332 3.8 23.3 1.0
CD2 A:LEU336 3.8 13.9 1.0
CG B:LEU209 3.9 11.6 1.0
N B:LEU209 4.0 10.2 1.0
CA B:GLY208 4.1 10.2 1.0
CD2 B:LEU209 4.3 12.2 1.0
CE A:LYS101 4.4 12.8 1.0
O A:GLN332 4.4 12.2 1.0
CA A:ALA333 4.4 11.1 1.0
C B:GLY208 4.4 10.0 1.0
CB A:LEU336 4.5 12.2 1.0
OE1 A:GLN332 4.5 24.8 1.0
C A:GLN332 4.5 12.6 1.0
CB A:ALA105 4.5 7.4 1.0
N A:ALA333 4.5 11.7 1.0
CD1 B:LEU209 4.7 12.6 1.0
CB A:GLN332 4.7 17.2 1.0
CG A:LEU336 4.8 12.6 1.0
CB B:LEU209 4.8 10.8 1.0
CG A:LYS101 4.8 10.4 1.0
CA B:LEU209 4.9 10.1 1.0
O A:HOH622 4.9 21.1 1.0

Chlorine binding site 3 out of 4 in 4gnv

Go back to Chlorine Binding Sites List in 4gnv
Chlorine binding site 3 out of 4 in the Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:22.1
occ:1.00
 O B:HOH667 3.0 25.7 1.0
O A:HOH669 3.3 25.4 1.0
NH1 A:ARG307 3.5 12.9 1.0
CG B:GLN327 3.8 11.5 1.0
NE2 B:GLN327 3.8 12.6 1.0
CD A:ARG311 4.1 12.3 1.0
CD A:ARG307 4.2 13.6 1.0
CG A:ARG307 4.3 13.1 1.0
CD1 B:LEU319 4.3 14.4 1.0
CD B:GLN327 4.4 11.7 1.0
O A:HOH604 4.4 20.9 1.0
CZ A:ARG307 4.6 13.3 1.0
O B:HOH696 4.6 28.7 1.0
CB B:GLN327 4.7 10.8 1.0
NH2 A:ARG311 4.7 13.7 1.0
CD2 B:LEU319 4.8 16.1 1.0
CG A:ARG311 4.8 11.4 1.0
NE A:ARG307 4.9 13.2 1.0
NE A:ARG311 5.0 12.8 1.0

Chlorine binding site 4 out of 4 in 4gnv

Go back to Chlorine Binding Sites List in 4gnv
Chlorine binding site 4 out of 4 in the Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:10.6
occ:1.00
 NE2 B:GLN332 3.0 26.1 1.0
O B:HOH530 3.2 11.1 1.0
O B:HOH754 3.2 28.8 1.0
CG B:GLN332 3.4 19.9 1.0
CD B:GLN332 3.6 23.6 1.0
CG A:LEU209 3.9 13.1 1.0
CD2 B:LEU336 3.9 14.4 1.0
N A:LEU209 4.1 10.2 1.0
CA A:GLY208 4.2 10.1 1.0
CD2 A:LEU209 4.2 13.9 1.0
CE B:LYS101 4.3 11.4 1.0
O B:GLN332 4.4 11.8 1.0
C B:GLN332 4.4 12.2 1.0
N B:ALA333 4.4 11.2 1.0
CA B:ALA333 4.4 10.9 1.0
CB B:GLN332 4.5 16.9 1.0
CB B:LEU336 4.5 12.6 1.0
C A:GLY208 4.6 9.6 1.0
CD1 A:LEU209 4.6 15.4 1.0
CB B:ALA105 4.6 8.1 1.0
OE1 B:GLN332 4.7 25.8 1.0
CG B:LYS101 4.7 10.6 1.0
CB A:LEU209 4.8 11.9 1.0
O B:HOH551 4.8 17.9 1.0
CG B:LEU336 4.8 13.4 1.0
CA A:LEU209 4.9 10.3 1.0

Reference:

D.R.Davies, J.Abendroth, B.Staker, L.Stewart. Crystal Structure of Beta-Hexosaminidase 1 From Burkholderia Cenocepacia J2315 with Bound N-Acetyl-D-Glucosamine To Be Published.
Page generated: Fri Jul 11 15:46:35 2025

Last articles

Cl in 4R7T
Cl in 4R6H
Cl in 4R7H
Cl in 4R7J
Cl in 4R7F
Cl in 4R73
Cl in 4R6V
Cl in 4R72
Cl in 4R69
Cl in 4R68
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy