Chlorine in PDB 4gsx: High Resolution Structure of Dengue Virus Serotype 1 Se Containing Stem

The structure of High Resolution Structure of Dengue Virus Serotype 1 Se Containing Stem, PDB code: 4gsx was solved by D.E.Klein, J.L.Choi, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.13 / 1.90
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	77.571, 77.571, 292.518, 90.00, 90.00, 120.00
R / Rfree (%)	16.1 / 18.6

The structure of High Resolution Structure of Dengue Virus Serotype 1 Se Containing Stem also contains other interesting chemical elements:

Cadmium

(Cd)

4 atoms

The binding sites of Chlorine atom in the High Resolution Structure of Dengue Virus Serotype 1 Se Containing Stem (pdb code 4gsx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the High Resolution Structure of Dengue Virus Serotype 1 Se Containing Stem, PDB code: 4gsx:

Chlorine binding site 1 out of 1 in the High Resolution Structure of Dengue Virus Serotype 1 Se Containing Stem


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Resolution Structure of Dengue Virus Serotype 1 Se Containing Stem within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl504 b:13.0 occ:1.00 O A:HOH628 2.9 14.9 1.0 N A:GLY102 3.2 9.5 1.0 O B:HOH796 3.2 18.9 1.0 N B:GLU311 3.3 12.3 1.0 CA A:GLY102 3.6 10.1 1.0 CG B:GLU311 3.7 21.1 1.0 CE1 A:PHE108 3.7 8.0 1.0 CA B:LYS310 3.7 14.4 1.0 C A:GLY100 3.8 9.3 1.0 ND2 A:ASN103 3.8 9.4 1.0 CA A:GLY100 3.9 8.5 1.0 CB B:LYS310 3.9 13.6 1.0 N A:HIS101 3.9 8.7 1.0 C B:LYS310 4.0 12.1 1.0 CB B:GLU311 4.1 19.2 1.0 O A:GLY100 4.1 9.2 1.0 N A:GLY100 4.1 10.0 1.0 C A:GLY102 4.3 13.2 1.0 C A:HIS101 4.3 9.8 1.0 CD1 A:PHE108 4.3 9.8 1.0 CA B:GLU311 4.3 14.4 1.0 N A:ASN103 4.3 11.7 1.0 CD B:GLU311 4.6 20.8 1.0 CG A:ASN103 4.6 7.6 1.0 OE2 B:GLU311 4.6 18.3 1.0 CA A:HIS101 4.7 10.0 1.0 CZ A:PHE108 4.7 11.4 1.0 C A:ARG99 4.8 9.2 1.0 O B:HOH667 4.9 17.1 1.0 OD1 A:ASN103 4.9 7.6 1.0

D.E.Klein, J.L.Choi, S.C.Harrison. Structure of A Dengue Virus Envelope Protein Late-Stage Fusion Intermediate. J.Virol. V. 87 2287 2013.
ISSN: ISSN 0022-538X
PubMed: 23236058
DOI: 10.1128/JVI.02957-12