Atomistry » Chlorine » PDB 4gta-4h1t » 4gxh
Atomistry »
  Chlorine »
    PDB 4gta-4h1t »
      4gxh »

Chlorine in PDB 4gxh: Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004

Enzymatic activity of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004

All present enzymatic activity of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004:
3.4.19.3;

Protein crystallography data

The structure of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004, PDB code: 4gxh was solved by A.Ghosh, S.C.Almo, New York Structural Genomics Research Consortium(Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.69 / 2.70
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 117.179, 117.179, 186.615, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 (pdb code 4gxh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004, PDB code: 4gxh:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 1 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:71.5
occ:1.00
 N A:GLN70 2.9 35.4 1.0
CZ A:PHE12 3.1 54.4 0.6
ND2 A:ASN18 3.1 59.6 1.0
OD1 A:ASN18 3.6 51.4 1.0
CE1 A:PHE12 3.6 53.9 0.6
CB A:GLN70 3.6 44.6 1.0
CA A:GLY69 3.6 39.0 1.0
C A:GLY69 3.7 36.9 1.0
CD2 A:PHE9 3.8 43.7 1.0
CG A:ASN18 3.8 54.3 1.0
CA A:GLN70 3.8 35.1 1.0
CE2 A:PHE12 4.0 52.1 0.6
CB A:PHE9 4.1 51.0 1.0
OG A:SER20 4.1 55.6 1.0
SG A:CYS143 4.2 43.1 1.0
O A:GLN70 4.2 32.2 1.0
CG A:PHE9 4.3 45.8 1.0
C A:GLN70 4.5 34.9 1.0
CG A:GLN70 4.6 56.6 1.0
CE2 A:PHE9 4.6 42.2 1.0
CD1 A:PHE12 4.8 59.5 0.6
O A:GLY69 4.9 39.8 1.0
CB A:SER20 4.9 48.9 1.0
NE2 A:GLN70 4.9 60.3 1.0

Chlorine binding site 2 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 2 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:54.7
occ:1.00
 ND2 B:ASN18 3.0 59.3 1.0
N B:GLN70 3.1 29.8 1.0
OD1 B:ASN18 3.7 55.2 1.0
CB B:GLN70 3.7 24.6 1.0
CD2 B:PHE9 3.8 33.3 1.0
CG B:ASN18 3.8 59.3 1.0
CA B:GLY69 3.9 34.9 1.0
C B:GLY69 3.9 31.2 1.0
CA B:GLN70 4.0 23.6 1.0
CB B:PHE9 4.1 36.5 1.0
OG B:SER20 4.1 37.5 1.0
SG B:CYS143 4.2 42.3 1.0
CG B:PHE9 4.2 39.4 1.0
O B:GLN70 4.4 29.2 1.0
CE2 B:PHE9 4.6 33.0 1.0
C B:GLN70 4.7 31.7 1.0
CB B:SER20 4.9 34.8 1.0
CG B:GLN70 5.0 44.9 1.0

Chlorine binding site 3 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 3 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:60.0
occ:1.00
 N C:GLN70 2.9 31.9 1.0
ND2 C:ASN18 3.3 40.3 1.0
CB C:GLN70 3.5 29.7 1.0
OD1 C:ASN18 3.6 40.7 1.0
CA C:GLY69 3.7 30.3 1.0
CD1 C:PHE9 3.8 41.6 1.0
CA C:GLN70 3.8 31.7 1.0
C C:GLY69 3.8 32.6 1.0
OG C:SER20 3.8 43.0 1.0
CG C:ASN18 3.9 44.1 1.0
CB C:PHE9 4.0 41.2 1.0
SG C:CYS143 4.1 50.0 1.0
CG C:PHE9 4.2 41.9 1.0
O C:GLN70 4.2 30.6 1.0
C C:GLN70 4.5 29.7 1.0
CE1 C:PHE9 4.6 44.6 1.0
CB C:SER20 4.7 38.8 1.0
CG C:GLN70 4.8 52.7 1.0
O C:GLY69 5.0 35.2 1.0

Chlorine binding site 4 out of 4 in 4gxh

Go back to Chlorine Binding Sites List in 4gxh
Chlorine binding site 4 out of 4 in the Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl303

b:57.5
occ:1.00
 ND2 D:ASN18 2.9 45.0 1.0
N D:GLN70 3.1 26.6 1.0
CB D:GLN70 3.6 34.5 1.0
OD1 D:ASN18 3.7 47.5 1.0
CG D:ASN18 3.8 46.8 1.0
CD2 D:PHE9 3.8 42.2 1.0
CA D:GLY69 3.9 26.1 1.0
CA D:GLN70 3.9 29.8 1.0
C D:GLY69 3.9 28.3 1.0
OG D:SER20 4.0 47.6 1.0
CB D:PHE9 4.1 38.6 1.0
SG D:CYS143 4.2 50.1 1.0
CG D:PHE9 4.2 41.1 1.0
O D:GLN70 4.4 32.2 1.0
CE2 D:PHE9 4.6 41.1 1.0
C D:GLN70 4.6 30.5 1.0
CB D:SER20 4.9 40.0 1.0
NE2 D:GLN70 4.9 48.8 1.0
CG D:GLN70 5.0 42.4 1.0

Reference:

A.Ghosh, R.Bhoshle, R.Toro, A.Gizzi, B.Hillerich, R.Seidel, S.C.Almo, New York Structural Genomics Research Consortium. Crystal Structure of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 (Casp Target) To Be Published.
Page generated: Fri Jul 11 15:57:02 2025

Last articles

Mg in 6VAT
Mg in 6VAO
Mg in 6V9K
Mg in 6V9O
Mg in 6V9N
Mg in 6V9L
Mg in 6V9M
Mg in 6V9J
Mg in 6V9F
Mg in 6V94
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy