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Chlorine in PDB 4h3y: Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site

Enzymatic activity of Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site

All present enzymatic activity of Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site:
2.1.1.228;

Protein crystallography data

The structure of Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site, PDB code: 4h3y was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.87 / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 58.970, 187.400, 127.640, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 23.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site (pdb code 4h3y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site, PDB code: 4h3y:

Chlorine binding site 1 out of 1 in 4h3y

Go back to Chlorine Binding Sites List in 4h3y
Chlorine binding site 1 out of 1 in the Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Asymmetric Dimer of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound to S-Adenosyl Homocystein in One Half-Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:59.4
occ:1.00
 ND1 A:HIS100 3.2 82.2 1.0
N B:VAL141 3.2 41.7 1.0
CE1 A:HIS159 3.5 60.0 1.0
CA B:PHE140 3.7 42.4 1.0
CB B:PHE140 3.9 41.0 1.0
C B:PHE140 4.0 41.8 1.0
CA A:HIS100 4.0 55.9 1.0
CB B:VAL141 4.1 46.1 1.0
CG A:HIS100 4.1 76.0 1.0
CB A:HIS100 4.1 61.6 1.0
CG1 A:VAL103 4.1 39.7 1.0
CB A:VAL103 4.2 40.7 1.0
CA B:VAL141 4.2 42.2 1.0
CE1 A:HIS100 4.2 82.1 1.0
CG2 A:VAL103 4.2 39.3 1.0
CG2 B:VAL141 4.3 48.4 1.0
NE2 A:HIS159 4.3 60.2 1.0
O B:VAL141 4.5 36.7 1.0
ND1 A:HIS159 4.5 58.5 1.0
CB A:ALA155 4.8 32.0 1.0
N A:HIS100 4.8 51.3 1.0
C B:VAL141 4.9 37.7 1.0
NE2 A:GLN172 4.9 0.9 1.0
O A:HIS100 4.9 55.0 1.0

Reference:

L.Baugh, L.A.Gallagher, R.Patrapuvich, M.C.Clifton, A.S.Gardberg, T.E.Edwards, B.Armour, D.W.Begley, S.H.Dieterich, D.M.Dranow, J.Abendroth, J.W.Fairman, D.Fox, B.L.Staker, I.Phan, A.Gillespie, R.Choi, S.Nakazawa-Hewitt, M.T.Nguyen, A.Napuli, L.Barrett, G.W.Buchko, R.Stacy, P.J.Myler, L.J.Stewart, C.Manoil, W.C.Van Voorhis. Combining Functional and Structural Genomics to Sample the Essential Burkholderia Structome. Plos One V. 8 53851 2013.
ISSN: ESSN 1932-6203
PubMed: 23382856
DOI: 10.1371/JOURNAL.PONE.0053851
Page generated: Sun Jul 21 15:26:03 2024

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