Chlorine in PDB 4hsi: Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH

The structure of Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH, PDB code: 4hsi was solved by E.E.Heldwein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.91 / 3.10
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	117.295, 117.295, 321.872, 90.00, 90.00, 120.00
R / Rfree (%)	20.5 / 25.5

The binding sites of Chlorine atom in the Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH (pdb code 4hsi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH, PDB code: 4hsi:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl805 b:30.2 occ:1.00 NH2 A:ARG515 2.4 15.4 1.0 CE1 A:HIS512 3.3 26.8 1.0 ND1 A:HIS512 3.4 26.8 1.0 CZ A:ARG515 3.6 15.4 1.0 OG1 A:THR394 3.7 12.7 1.0 NH1 A:ARG385 3.9 41.9 1.0 CG2 A:THR394 4.0 12.7 1.0 CD A:ARG385 4.0 41.9 1.0 CZ A:ARG385 4.1 41.9 1.0 O A:PHE508 4.1 12.8 1.0 CB A:SER387 4.1 14.1 1.0 NH1 A:ARG515 4.1 15.4 1.0 NE A:ARG385 4.2 41.9 1.0 CA A:PHE508 4.2 12.8 1.0 OG A:SER387 4.2 14.1 1.0 CB A:THR394 4.3 12.7 1.0 CA A:GLY511 4.4 15.2 1.0 O A:GLY507 4.4 15.2 1.0 NE2 A:HIS512 4.5 26.8 1.0 N A:HIS512 4.6 26.8 1.0 NE A:ARG515 4.6 15.4 1.0 C A:PHE508 4.6 12.8 1.0 CD2 A:PHE508 4.6 12.8 1.0 CG A:HIS512 4.7 26.8 1.0 C A:GLY511 4.8 15.2 1.0 NH2 A:ARG385 4.9 41.9 1.0 CG A:ARG385 4.9 41.9 1.0 N A:GLY511 5.0 15.2 1.0 N A:PHE508 5.0 12.8 1.0

Chlorine binding site 2 out of 4 in the Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl803 b:67.3 occ:1.00 NH1 B:ARG515 3.2 33.0 1.0 ND1 B:HIS512 3.6 16.0 1.0 OG1 B:THR394 3.7 37.5 1.0 CA B:PHE508 3.7 30.7 1.0 O B:PHE508 3.8 30.7 1.0 CE1 B:HIS512 3.9 16.0 1.0 CA B:GLY511 3.9 15.2 1.0 O B:GLY507 4.0 19.3 1.0 CZ B:ARG515 4.1 33.0 1.0 NH2 B:ARG515 4.2 33.0 1.0 C B:PHE508 4.2 30.7 1.0 N B:HIS512 4.2 16.0 1.0 CB B:THR394 4.2 37.5 1.0 CG2 B:THR394 4.3 37.5 1.0 N B:PHE508 4.4 30.7 1.0 C B:GLY507 4.4 19.3 1.0 C B:GLY511 4.4 15.2 1.0 CB B:SER387 4.7 39.0 1.0 N B:GLY511 4.7 15.2 1.0 CB B:PHE508 4.8 30.7 1.0 CD1 B:PHE508 4.9 30.7 1.0 CG B:HIS512 4.9 16.0 1.0

Chlorine binding site 3 out of 4 in the Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl805 b:32.3 occ:1.00 NH2 C:ARG515 2.4 19.4 1.0 CE1 C:HIS512 3.1 25.0 1.0 OG1 C:THR394 3.4 7.9 1.0 ND1 C:HIS512 3.4 25.0 1.0 CZ C:ARG515 3.5 19.4 1.0 CG2 C:THR394 3.8 7.9 1.0 NH1 C:ARG515 4.0 19.4 1.0 CB C:SER387 4.0 27.4 1.0 CA C:PHE508 4.0 15.3 1.0 CB C:THR394 4.1 7.9 1.0 O C:PHE508 4.1 15.3 1.0 NE2 C:HIS512 4.2 25.0 1.0 OG C:SER387 4.4 27.4 1.0 O C:GLY507 4.5 30.2 1.0 CA C:GLY511 4.5 25.4 1.0 NE C:ARG515 4.5 19.4 1.0 C C:PHE508 4.6 15.3 1.0 CG C:HIS512 4.6 25.0 1.0 N C:PHE508 4.7 15.3 1.0 N C:HIS512 4.8 25.0 1.0 CD2 C:PHE508 4.8 15.3 1.0 C C:GLY511 4.8 25.4 1.0 CB C:PHE508 4.9 15.3 1.0 C C:GLY507 4.9 30.2 1.0

Chlorine binding site 4 out of 4 in the Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Glycoprotein B From Herpes Simplex Virus Type 1, A504P/R505G/Q507G/N511G Mutant, Low-pH within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl803 b:71.9 occ:1.00 NH1 D:ARG515 3.3 11.3 1.0 ND1 D:HIS512 3.5 18.3 1.0 OG1 D:THR394 3.7 45.8 1.0 CE1 D:HIS512 3.8 18.3 1.0 NH2 D:ARG515 3.8 11.3 1.0 O D:PHE508 3.9 25.1 1.0 CA D:PHE508 4.0 25.1 1.0 CZ D:ARG515 4.0 11.3 1.0 CA D:GLY511 4.1 13.5 1.0 N D:HIS512 4.2 18.3 1.0 O D:GLY507 4.2 5.5 1.0 CB D:THR394 4.3 45.8 1.0 C D:PHE508 4.3 25.1 1.0 C D:GLY511 4.4 13.5 1.0 CG2 D:THR394 4.5 45.8 1.0 N D:PHE508 4.6 25.1 1.0 C D:GLY507 4.7 5.5 1.0 CG D:HIS512 4.7 18.3 1.0 CB D:SER387 4.7 27.0 1.0 N D:GLY511 4.8 13.5 1.0 NE2 D:HIS512 4.9 18.3 1.0 OG D:SER387 5.0 27.0 1.0 CD2 D:PHE508 5.0 25.1 1.0 CB D:PHE508 5.0 25.1 1.0 CA D:HIS512 5.0 18.3 1.0

E.Vitu, S.Sharma, S.D.Stampfer, E.E.Heldwein. Extensive Mutagenesis of the Hsv-1 Gb Ectodomain Reveals Remarkable Stability of Its Postfusion Form. J.Mol.Biol. V. 425 2056 2013.
ISSN: ISSN 0022-2836
PubMed: 23500487
DOI: 10.1016/J.JMB.2013.03.001