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Chlorine in PDB 4ikb: Crystal Structure of SNX11 Px Domain

Protein crystallography data

The structure of Crystal Structure of SNX11 Px Domain, PDB code: 4ikb was solved by J.Xu, T.Xu, J.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.12 / 1.78
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.480, 38.740, 73.460, 90.00, 101.13, 90.00
R / Rfree (%) 16.9 / 22.1

Other elements in 4ikb:

The structure of Crystal Structure of SNX11 Px Domain also contains other interesting chemical elements:

Arsenic (As) 3 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of SNX11 Px Domain (pdb code 4ikb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of SNX11 Px Domain, PDB code: 4ikb:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4ikb

Go back to Chlorine Binding Sites List in 4ikb
Chlorine binding site 1 out of 3 in the Crystal Structure of SNX11 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of SNX11 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:48.2
occ:1.00
O A:HOH430 4.4 24.4 1.0
O A:HOH361 4.6 41.1 1.0
O A:HOH358 4.8 30.6 1.0
O A:HOH403 4.9 18.7 1.0

Chlorine binding site 2 out of 3 in 4ikb

Go back to Chlorine Binding Sites List in 4ikb
Chlorine binding site 2 out of 3 in the Crystal Structure of SNX11 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of SNX11 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:45.6
occ:1.00
N A:LEU143 3.2 27.6 1.0
O A:HOH381 3.2 38.9 1.0
C A:GLY141 3.5 23.2 1.0
CB A:LEU143 3.6 29.3 1.0
CA A:GLY141 3.6 20.8 1.0
N A:ARG142 3.7 22.9 1.0
CA A:LEU143 3.8 30.4 1.0
O A:GLY141 3.9 21.0 1.0
AS A:CAS138 4.0 22.8 1.0
C A:LEU143 4.2 34.3 1.0
C A:ARG142 4.2 25.3 1.0
O A:CAS138 4.4 13.3 1.0
N A:GLY141 4.5 19.0 1.0
CA A:CAS138 4.5 15.0 1.0
CA A:ARG142 4.5 25.0 1.0
CE2 A:CAS138 4.7 22.8 1.0
O A:ALA137 4.8 13.9 1.0
C A:CAS138 4.9 15.2 1.0
CG A:LEU143 4.9 28.8 1.0

Chlorine binding site 3 out of 3 in 4ikb

Go back to Chlorine Binding Sites List in 4ikb
Chlorine binding site 3 out of 3 in the Crystal Structure of SNX11 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of SNX11 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:66.0
occ:1.00
O B:HOH379 3.0 28.6 1.0
N B:ASN28 3.3 17.7 1.0
N B:GLU29 3.3 21.2 1.0
O B:VAL26 3.5 15.9 1.0
O B:HOH340 3.8 33.5 1.0
C B:GLN27 3.9 16.4 1.0
CA B:ASN28 3.9 18.7 1.0
CA B:GLN27 4.0 15.1 1.0
C B:ASN28 4.1 19.7 1.0
CB B:GLU29 4.2 28.6 1.0
O B:HOH375 4.2 31.9 1.0
CA B:GLU29 4.3 24.6 1.0
C B:VAL26 4.4 16.8 1.0
N B:GLN27 4.6 15.2 1.0
O B:GLN27 4.8 15.9 1.0
OE1 B:GLN27 4.8 16.4 1.0

Reference:

J.Xu, T.Xu, J.Liu. Structure of Sorting Nexin 11 (SNX11) Reveals A Novel Extended Px Domain (Pxe Domain) Critical For the Inhibition of Sorting Nexin 10 (SNX10) Induced Vacuolation To Be Published.
Page generated: Fri Jul 11 16:55:50 2025

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