Chlorine in PDB 4j5r: TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd

The structure of TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd, PDB code: 4j5r was solved by M.J.Schellenberg, C.D.Appel, J.Krahn, R.S.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.17 / 1.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.803, 72.004, 81.919, 90.00, 90.00, 90.00
R / Rfree (%)	11.8 / 15.3

The binding sites of Chlorine atom in the TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd (pdb code 4j5r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd, PDB code: 4j5r:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:7.8 occ:1.00 HG A:SER35 2.3 7.3 1.0 H A:MET40 2.4 6.4 1.0 H A:ARG39 2.6 7.2 0.6 H A:SER35 2.6 5.2 1.0 HO2N A:A1R201 2.6 6.9 1.0 H A:ARG39 2.7 7.2 0.5 OG A:SER35 3.1 7.6 1.0 O2N A:A1R201 3.2 7.6 1.0 HB2 A:ARG39 3.3 7.8 1.0 N A:ARG39 3.3 6.8 1.0 N A:MET40 3.3 6.3 1.0 HB A:ILE34 3.3 5.2 1.0 HB2 A:ALA87 3.4 9.7 1.0 O A:HOH307 3.4 7.7 1.0 N A:SER35 3.5 5.5 1.0 H A:CYS38 3.5 8.1 0.5 HB3 A:SER35 3.6 6.7 1.0 HA A:ALA87 3.7 8.6 1.0 HA A:CYS38 3.7 7.8 0.5 CB A:SER35 3.8 6.5 1.0 HA A:CYS38 3.8 7.8 0.6 H A:CYS38 3.8 8.2 0.6 O3N A:A1R201 3.9 6.3 1.0 HA A:MET40 3.9 6.1 1.0 N A:CYS38 3.9 8.0 0.5 HB1 A:ALA87 3.9 9.6 1.0 CA A:ARG39 3.9 6.8 1.0 CB A:ALA87 4.0 9.9 1.0 CB A:ARG39 4.0 8.0 1.0 C A:CYS38 4.0 7.9 0.5 CA A:CYS38 4.1 8.0 0.5 N A:CYS38 4.1 8.2 0.6 HA A:ILE34 4.1 5.0 1.0 CA A:SER35 4.1 6.1 1.0 C A:ARG39 4.1 7.0 1.0 HG2 A:MET40 4.1 6.6 1.0 C A:CYS38 4.2 7.0 0.6 CA A:MET40 4.2 5.6 1.0 HB2 A:ASP37 4.2 11.2 1.0 CA A:CYS38 4.2 7.9 0.6 HG3 A:MET40 4.2 6.5 1.0 CB A:ILE34 4.2 5.1 1.0 O A:SER35 4.3 6.1 1.0 CA A:ALA87 4.3 8.6 1.0 C2N A:A1R201 4.4 6.1 1.0 HO3N A:A1R201 4.5 6.2 1.0 C A:ILE34 4.5 4.9 1.0 CA A:ILE34 4.5 4.9 1.0 C3N A:A1R201 4.5 6.2 1.0 C A:SER35 4.6 6.3 1.0 H3N A:A1R201 4.6 6.2 1.0 CG A:MET40 4.6 6.7 1.0 HG3 A:ARG39 4.6 9.2 1.0 H A:GLY41 4.7 5.8 1.0 HB3 A:ARG39 4.7 8.1 1.0 HB2 A:SER35 4.7 6.7 1.0 HG22 A:ILE34 4.7 5.5 1.0 HD12 A:ILE34 4.8 6.2 1.0 C A:ASP37 4.8 8.4 1.0 H A:ASP37 4.8 7.5 1.0 H1N1 A:A1R201 4.8 5.5 1.0 HB3 A:ALA87 4.9 9.4 1.0 CG A:ARG39 4.9 9.4 1.0 HD3 A:ARG39 4.9 12.4 1.0 HA A:ARG39 4.9 7.0 1.0 CG2 A:ILE34 5.0 5.5 1.0 HA A:SER35 5.0 6.2 1.0 N A:ALA87 5.0 8.1 1.0

Chlorine binding site 2 out of 3 in the TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:10.3 occ:1.00 H B:GLU57 2.8 6.4 1.0 H A:GLU57 2.8 6.8 1.0 HA2 A:GLY54 2.9 6.5 1.0 HA2 B:GLY54 2.9 6.0 1.0 HB3 A:GLN56 3.0 8.5 0.7 O A:HOH469 3.1 8.1 1.0 HB2 A:GLU57 3.2 7.0 1.0 HB2 B:GLN56 3.2 9.7 1.0 O B:HOH324 3.3 9.7 1.0 HB2 B:GLU57 3.3 8.2 1.0 O B:HOH322 3.4 8.7 1.0 HB2 A:GLN56 3.4 8.8 0.3 N B:GLU57 3.5 6.3 1.0 N A:GLU57 3.6 6.5 1.0 H B:GLN56 3.6 6.9 1.0 H A:GLN56 3.7 7.3 0.3 H A:GLN56 3.7 7.3 0.7 O A:HOH319 3.7 10.9 1.0 CA B:GLY54 3.8 5.8 1.0 CA A:GLY54 3.8 6.4 1.0 HB3 A:GLU57 3.8 6.9 1.0 CB A:GLU57 3.9 6.9 1.0 HB3 B:GLU57 3.9 7.7 1.0 CB A:GLN56 3.9 8.8 0.7 CB B:GLU57 4.0 7.7 1.0 H B:GLY54 4.0 5.7 1.0 C B:GLY54 4.0 5.6 1.0 N B:GLN56 4.1 6.4 1.0 CB B:GLN56 4.1 9.9 1.0 C A:GLY54 4.1 6.3 1.0 H A:GLY54 4.1 6.0 1.0 N A:GLN56 4.2 7.3 1.0 HB2 A:GLN56 4.2 8.5 0.7 CB A:GLN56 4.3 8.8 0.3 CA A:GLU57 4.3 6.8 1.0 O B:GLY54 4.3 6.3 1.0 CA B:GLU57 4.3 7.0 1.0 CA B:GLN56 4.3 7.4 1.0 O A:GLY54 4.4 6.6 1.0 N B:GLY54 4.4 5.4 1.0 C B:GLN56 4.4 6.3 1.0 CA A:GLN56 4.4 8.0 0.7 HA3 A:GLY54 4.4 6.5 1.0 C A:GLN56 4.4 6.7 1.0 HH22 A:ARG73 4.4 4.3 0.5 HA3 B:GLY54 4.5 5.8 1.0 CA A:GLN56 4.5 7.9 0.3 N A:GLY54 4.5 5.9 1.0 N B:VAL55 4.5 6.1 1.0 HH22 B:ARG73 4.5 4.9 0.5 HB3 B:GLN56 4.6 9.4 1.0 H B:VAL55 4.6 6.0 1.0 N A:VAL55 4.6 6.7 1.0 HA A:GLU57 4.6 6.7 1.0 HA B:GLU57 4.7 6.9 1.0 HB3 A:GLN56 4.8 8.2 0.3 H A:VAL55 4.8 6.6 1.0 OE1 A:GLU57 4.8 10.7 1.0 HG2 B:GLN56 4.9 11.0 1.0 HH21 A:ARG73 5.0 5.2 0.6 CG A:GLN56 5.0 8.6 0.7

Chlorine binding site 3 out of 3 in the TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of TARG1 (C6ORF130), Terminal Adp-Ribose Glycohydrolase 1 Bound to Adp- Hpd within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl202 b:7.7 occ:1.00 HG B:SER35 2.3 6.2 1.0 H B:MET40 2.5 6.3 1.0 HO2N B:A1R201 2.6 6.3 1.0 H B:ARG39 2.6 6.9 0.8 H B:SER35 2.6 4.9 1.0 H B:ARG39 2.8 7.0 0.2 OG B:SER35 3.1 6.8 1.0 HB2 B:ARG39 3.2 8.0 1.0 O2N B:A1R201 3.2 7.2 1.0 N B:ARG39 3.3 6.4 1.0 N B:MET40 3.3 6.0 1.0 HB2 B:ALA87 3.3 9.1 1.0 O B:HOH309 3.4 7.2 1.0 HB B:ILE34 3.4 4.9 1.0 H B:CYS38 3.4 7.1 0.2 HB3 B:SER35 3.5 5.7 1.0 N B:SER35 3.5 5.1 1.0 HA B:ALA87 3.7 7.7 1.0 CB B:SER35 3.7 6.2 1.0 H B:CYS38 3.7 7.1 0.8 HA B:CYS38 3.8 7.3 0.2 O3N B:A1R201 3.9 6.1 1.0 HA B:MET40 3.9 5.8 1.0 N B:CYS38 3.9 7.0 0.2 HB1 B:ALA87 3.9 9.1 1.0 HA B:CYS38 3.9 6.8 0.8 CA B:ARG39 3.9 7.0 1.0 CB B:ARG39 3.9 7.8 1.0 CB B:ALA87 4.0 9.6 1.0 C B:CYS38 4.0 7.1 0.2 N B:CYS38 4.0 7.0 0.8 CA B:SER35 4.1 5.2 1.0 CA B:CYS38 4.1 7.7 0.2 C B:ARG39 4.1 6.6 1.0 HA B:ILE34 4.1 4.6 1.0 HG2 B:MET40 4.2 6.4 1.0 HG3 B:MET40 4.2 6.4 1.0 C B:CYS38 4.2 6.4 0.8 CA B:MET40 4.2 5.5 1.0 HB2 B:ASP37 4.3 10.9 1.0 CA B:CYS38 4.3 6.7 0.8 O B:SER35 4.3 6.0 1.0 CB B:ILE34 4.3 5.0 1.0 CA B:ALA87 4.3 7.5 1.0 C2N B:A1R201 4.4 6.1 1.0 HO3N B:A1R201 4.5 5.8 1.0 C B:ILE34 4.5 4.5 1.0 C B:SER35 4.5 4.8 1.0 CA B:ILE34 4.5 4.4 1.0 C3N B:A1R201 4.6 5.3 1.0 HG3 B:ARG39 4.6 9.1 1.0 CG B:MET40 4.6 6.4 1.0 HB3 B:ARG39 4.6 7.9 1.0 H3N B:A1R201 4.6 5.5 1.0 HB2 B:SER35 4.6 6.3 1.0 H B:GLY41 4.7 5.4 1.0 C B:ASP37 4.7 7.3 1.0 HD3 B:ARG39 4.8 11.2 1.0 H B:ASP37 4.8 6.8 1.0 HG22 B:ILE34 4.8 5.4 1.0 CG B:ARG39 4.8 9.8 1.0 HB3 B:ALA87 4.8 9.0 1.0 H1N1 B:A1R201 4.9 5.5 1.0 HD12 B:ILE34 4.9 5.8 1.0 HA B:ARG39 4.9 7.3 1.0 N B:ALA87 4.9 7.6 1.0 H B:ALA87 4.9 7.5 1.0 O B:CYS38 5.0 6.4 0.2 HA B:SER35 5.0 5.2 1.0

R.Sharifi, R.Morra, C.D.Appel, M.Tallis, B.Chioza, G.Jankevicius, M.A.Simpson, I.Matic, E.Ozkan, B.Golia, M.J.Schellenberg, R.Weston, J.G.Williams, M.N.Rossi, H.Galehdari, J.Krahn, A.Wan, R.C.Trembath, A.H.Crosby, D.Ahel, R.Hay, A.G.Ladurner, G.Timinszky, R.S.Williams, I.Ahel. Deficiency of Terminal Adp-Ribose Protein Glycohydrolase TARG1/C6ORF130 in Neurodegenerative Disease. Embo J. V. 32 1225 2013.
ISSN: ISSN 0261-4189
PubMed: 23481255
DOI: 10.1038/EMBOJ.2013.51