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Chlorine in PDB 4jpr: Structure of the Aslv Fusion Subunit Core

Protein crystallography data

The structure of Structure of the Aslv Fusion Subunit Core, PDB code: 4jpr was solved by H.Aydin, B.M.Smrke, J.E.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.22 / 2.00
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 42.544, 42.544, 119.982, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 23.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Aslv Fusion Subunit Core (pdb code 4jpr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the Aslv Fusion Subunit Core, PDB code: 4jpr:

Chlorine binding site 1 out of 1 in 4jpr

Go back to Chlorine Binding Sites List in 4jpr
Chlorine binding site 1 out of 1 in the Structure of the Aslv Fusion Subunit Core


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Aslv Fusion Subunit Core within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:13.8
occ:0.33
HD21 A:ASN479 2.4 14.8 1.0
HG13 A:VAL476 3.1 18.9 1.0
HA A:VAL476 3.1 22.3 1.0
ND2 A:ASN479 3.2 12.3 1.0
HB2 A:ASN479 3.4 15.2 1.0
HB3 A:ASN479 3.7 15.2 1.0
HG23 A:VAL476 3.7 17.1 1.0
HG21 A:VAL476 3.7 17.1 1.0
HD22 A:ASN479 3.7 14.8 1.0
CB A:ASN479 3.8 12.7 1.0
CG1 A:VAL476 4.0 15.7 1.0
CG A:ASN479 4.0 13.3 1.0
CA A:VAL476 4.0 18.6 1.0
CG2 A:VAL476 4.1 14.2 1.0
CB A:VAL476 4.3 18.6 1.0
HG12 A:VAL476 4.5 18.9 1.0
O A:VAL476 4.5 14.0 1.0
HG11 A:VAL476 4.6 18.9 1.0
C A:VAL476 4.8 13.3 1.0
HG22 A:VAL476 5.0 17.1 1.0

Reference:

H.Aydin, B.M.Smrke, J.E.Lee. Structural Characterization of A Fusion Glycoprotein From A Retrovirus That Undergoes A Hybrid 2-Step Entry Mechanism. Faseb J. V. 27 5059 2013.
ISSN: ISSN 0892-6638
PubMed: 24036886
DOI: 10.1096/FJ.13-232371
Page generated: Sun Jul 21 17:36:04 2024

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