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Chlorine in PDB 4lob: Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii

Protein crystallography data

The structure of Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii, PDB code: 4lob was solved by Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, H.J.Imker, N.Al Obaidi, M.Stead, J.Love, C.D.Poulter, J.A.Gerlt, S.C.Almo, Enzyme Functioninitiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.50 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 144.245, 46.008, 49.286, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 26.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii (pdb code 4lob). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii, PDB code: 4lob:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4lob

Go back to Chlorine Binding Sites List in 4lob
Chlorine binding site 1 out of 3 in the Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:42.5
occ:1.00
NH1 A:ARG51 2.7 25.7 1.0
O A:HOH527 2.9 33.9 1.0
N A:ARG51 3.3 37.1 1.0
N A:MET50 3.5 27.9 1.0
CB A:ARG51 3.5 29.9 1.0
CA A:ARG49 3.7 44.3 1.0
CG A:ARG51 3.7 28.2 1.0
C A:ARG49 3.7 47.6 1.0
CD A:ARG51 3.8 25.9 1.0
CD2 A:HIS81 3.8 23.3 1.0
CZ A:ARG51 3.9 34.1 1.0
CA A:ARG51 4.0 32.8 1.0
O A:LYS48 4.1 58.5 1.0
CG A:MET50 4.1 60.2 1.0
CD A:PRO52 4.1 26.5 1.0
NE2 A:HIS81 4.2 35.5 1.0
NE A:ARG51 4.3 26.9 1.0
C A:MET50 4.3 58.1 1.0
CA A:MET50 4.3 46.5 1.0
CG A:HIS81 4.4 26.3 1.0
CB A:ARG49 4.4 41.9 1.0
O A:ARG49 4.5 41.2 1.0
N A:ARG49 4.8 54.7 1.0
CB A:MET50 4.8 36.1 1.0
C A:LYS48 4.8 85.9 1.0
CE1 A:HIS81 4.9 23.5 1.0

Chlorine binding site 2 out of 3 in 4lob

Go back to Chlorine Binding Sites List in 4lob
Chlorine binding site 2 out of 3 in the Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:51.9
occ:1.00
OG A:SER0 2.8 59.6 0.5
ND2 A:ASN-5 3.0 53.4 1.0
O A:HOH526 3.1 42.9 1.0
NE A:ARG318 3.1 33.8 1.0
NH1 A:ARG318 3.2 29.8 1.0
CZ A:ARG318 3.6 29.4 1.0
O A:HOH546 3.6 38.5 1.0
CD1 A:LEU-9 3.7 47.3 1.0
CG A:ASN-5 3.8 60.9 1.0
OD1 A:ASN-5 3.8 45.6 1.0
CB A:SER0 4.0 39.7 0.5
CB A:SER0 4.0 49.7 0.5
CB A:ARG318 4.2 29.6 1.0
CG A:ARG318 4.2 41.5 1.0
CD A:ARG318 4.2 38.7 1.0
CG A:LEU-9 4.3 60.8 1.0
OG A:SER0 4.3 32.6 0.5
CA A:ARG318 4.8 30.9 1.0
CD2 A:LEU-9 4.9 53.1 1.0
NH2 A:ARG318 4.9 30.5 1.0
CD2 A:LEU321 4.9 39.3 1.0
O A:ARG318 5.0 35.5 1.0

Chlorine binding site 3 out of 3 in 4lob

Go back to Chlorine Binding Sites List in 4lob
Chlorine binding site 3 out of 3 in the Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Polyprenyl Diphosphate Synthase A1S_2732 (Target Efi-509223) From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:61.5
occ:1.00
N A:ASP65 3.0 40.8 1.0
O A:HOH575 3.1 46.7 1.0
O A:HOH574 3.4 49.7 1.0
CB A:ASP65 3.6 68.7 1.0
CA A:LEU64 3.7 38.7 1.0
O A:ALA190 3.8 43.6 1.0
C A:LEU64 3.8 36.6 1.0
O A:ASP63 3.9 59.6 1.0
CA A:ASP65 3.9 55.8 1.0
CD1 A:LEU64 4.0 38.8 1.0
CA A:ALA190 4.0 40.1 1.0
C A:ALA190 4.3 42.7 1.0
CB A:ALA190 4.4 36.8 1.0
N A:LEU64 4.5 46.6 1.0
C A:ASP63 4.6 56.2 1.0
CB A:LEU64 4.7 43.8 1.0
CG A:LEU64 4.7 39.5 1.0
N A:ASN66 4.9 49.3 1.0
CG A:ASP65 5.0 99.3 1.0

Reference:

Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, H.J.Imker, N.Al Obaidi, M.Stead, J.Love, C.D.Poulter, J.A.Gerlt, S.C.Almo. Crystal Structure of Polyprenyl Diphosphate Synthase From Acinetobacter Baumannii To Be Published.
Page generated: Fri Jul 11 18:38:21 2025

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