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Chlorine in PDB 4n8u: Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629

Enzymatic activity of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629

All present enzymatic activity of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629:
1.10.3.2;

Protein crystallography data

The structure of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629, PDB code: 4n8u was solved by A.Gabdulkhakov, S.Tischenko, L.Yurevich, A.Lisov, A.Leontievsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.95 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.720, 79.600, 204.050, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22.8

Other elements in 4n8u:

The structure of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 also contains other interesting chemical elements:

Copper (Cu) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 (pdb code 4n8u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629, PDB code: 4n8u:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4n8u

Go back to Chlorine Binding Sites List in 4n8u
Chlorine binding site 1 out of 6 in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:48.1
occ:1.00
 OH A:TYR226 3.6 39.6 1.0
CZ A:TYR226 4.6 30.0 1.0
CE2 A:TYR226 4.6 30.5 1.0

Chlorine binding site 2 out of 6 in 4n8u

Go back to Chlorine Binding Sites List in 4n8u
Chlorine binding site 2 out of 6 in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:46.4
occ:1.00
 CA A:GLY180 3.4 16.0 1.0
N A:GLY180 3.6 14.1 1.0
CE A:LYS179 3.9 17.3 1.0
CG A:LYS179 3.9 18.9 1.0
CD A:LYS179 4.2 17.6 1.0
C A:LYS179 4.2 23.8 1.0
OG1 A:THR38 4.4 21.0 1.0
O A:ALA39 4.5 25.1 1.0
O A:LYS179 4.6 30.8 1.0
C A:GLY180 4.8 17.1 1.0
CB A:LYS179 5.0 15.8 1.0

Chlorine binding site 3 out of 6 in 4n8u

Go back to Chlorine Binding Sites List in 4n8u
Chlorine binding site 3 out of 6 in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:45.1
occ:1.00
 N B:LEU75 2.9 14.9 1.0
CB B:LEU75 3.5 11.1 1.0
CA B:PRO74 3.6 13.4 1.0
C B:PRO74 3.7 17.9 1.0
CA B:LEU75 3.8 13.7 1.0
CB B:PRO74 4.4 17.7 1.0
O B:GLY73 4.5 12.7 1.0
N B:PRO74 4.8 17.2 1.0
C B:LEU75 4.9 17.0 1.0
O B:LEU75 4.9 12.2 1.0
O B:PRO74 4.9 21.7 1.0
CG B:LEU75 5.0 14.5 1.0

Chlorine binding site 4 out of 6 in 4n8u

Go back to Chlorine Binding Sites List in 4n8u
Chlorine binding site 4 out of 6 in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl406

b:37.7
occ:1.00
 N B:HIS47 2.9 29.3 1.0
CA B:ARG46 3.6 24.1 1.0
C B:ARG46 3.7 29.7 1.0
CD2 B:HIS47 3.8 28.7 1.0
CA B:HIS47 3.9 24.4 1.0
CB B:HIS47 3.9 26.1 1.0
O B:HIS47 3.9 27.4 1.0
O B:VAL45 4.1 36.4 1.0
CG B:HIS47 4.2 34.0 1.0
C B:HIS47 4.3 20.7 1.0
CB B:ARG46 4.4 25.8 1.0
CD B:ARG46 4.7 36.5 1.0
N B:ARG46 4.7 29.1 1.0
C B:VAL45 4.8 25.2 1.0
O B:ARG46 4.9 27.7 1.0
CG B:ARG46 4.9 36.5 1.0

Chlorine binding site 5 out of 6 in 4n8u

Go back to Chlorine Binding Sites List in 4n8u
Chlorine binding site 5 out of 6 in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl404

b:26.4
occ:1.00
 N C:TYR227 3.4 9.9 1.0
CD1 C:TYR227 3.4 11.6 1.0
CA C:TYR226 3.5 15.1 1.0
CD1 C:TYR226 3.7 21.9 1.0
CB C:TYR226 3.8 12.0 1.0
CE1 B:TYR227 3.9 10.0 1.0
C C:TYR226 3.9 13.5 1.0
CE1 C:TYR227 4.0 9.4 1.0
O C:GLU225 4.0 18.7 1.0
CG C:TYR226 4.2 19.4 1.0
CG C:TYR227 4.3 16.2 1.0
OH B:TYR227 4.4 15.2 1.0
CA C:TYR227 4.5 15.3 1.0
CB C:TYR227 4.5 16.5 1.0
CZ B:TYR227 4.5 9.6 1.0
CD1 B:TYR227 4.6 14.3 1.0
N C:TYR226 4.6 12.8 1.0
O C:TYR227 4.7 14.1 1.0
C C:GLU225 4.7 18.7 1.0
CE1 C:TYR226 4.8 17.6 1.0

Chlorine binding site 6 out of 6 in 4n8u

Go back to Chlorine Binding Sites List in 4n8u
Chlorine binding site 6 out of 6 in the Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl405

b:37.1
occ:1.00
 N C:ALA280 2.6 14.8 1.0
O C:PRO309 3.0 42.7 1.0
OD1 A:ASN115 3.0 21.9 1.0
CA C:GLY279 3.4 13.0 1.0
C C:GLY279 3.4 17.5 1.0
CB C:ALA280 3.5 17.7 1.0
CA C:ALA280 3.6 15.8 1.0
O C:GLY310 3.7 35.0 1.0
CG1 A:ILE107 3.7 23.7 1.0
C C:PRO309 3.8 37.1 1.0
CB C:HIS311 3.9 47.2 1.0
CG A:ASN115 4.0 22.0 1.0
C C:GLY310 4.1 42.9 1.0
CB C:PRO309 4.2 20.2 1.0
O C:ALA280 4.3 17.6 1.0
CD1 A:ILE107 4.3 22.0 1.0
C C:ALA280 4.3 17.7 1.0
ND2 A:ASN115 4.5 14.9 1.0
N C:GLY310 4.5 35.3 1.0
CA C:PRO309 4.6 30.8 1.0
O C:GLY279 4.6 21.3 1.0
N C:HIS311 4.6 43.4 1.0
CG2 A:ILE107 4.7 13.0 1.0
CB A:ILE107 4.7 13.9 1.0
CG C:HIS311 4.7 52.4 1.0
CA C:GLY310 4.7 36.2 1.0
CA C:HIS311 4.8 48.0 1.0
CG2 C:ILE308 4.8 24.5 1.0
N C:GLY279 4.8 15.5 1.0
CD2 C:HIS311 4.9 53.2 1.0
N C:PRO309 5.0 33.2 1.0

Reference:

A.Gabdulkhakov, S.Tischenko, L.Yurevich, A.Lisov, A.Leontievsky. Two-Domain Laccase From Streptomyces Viridochromogenes at 2.4 A Resolution AC629 To Be Published.
Page generated: Sun Jul 21 20:30:50 2024

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