Atomistry » Chlorine » PDB 4nte-4o0a » 4nu7
Atomistry »
  Chlorine »
    PDB 4nte-4o0a »
      4nu7 »

Chlorine in PDB 4nu7: 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.

Enzymatic activity of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.

All present enzymatic activity of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.:
5.1.3.1;

Protein crystallography data

The structure of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii., PDB code: 4nu7 was solved by G.Minasov, J.Ruan, H.Ngo, L.Shuvalova, I.Dubrovska, K.Flores, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.88 / 2.05
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 138.510, 138.510, 349.329, 90.00, 90.00, 120.00
R / Rfree (%) 14.9 / 18.7

Other elements in 4nu7:

The structure of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. (pdb code 4nu7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii., PDB code: 4nu7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 4nu7

Go back to Chlorine Binding Sites List in 4nu7
Chlorine binding site 1 out of 5 in the 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:78.5
occ:1.00
 O C:HOH496 2.8 60.2 1.0
ND1 A:HIS44 3.3 34.9 1.0
O4 C:SO4304 4.1 53.9 0.5
CB A:HIS44 4.2 30.1 1.0
CG A:HIS44 4.2 30.0 1.0
CB D:PRO47 4.2 39.7 1.0
CE1 A:HIS44 4.3 33.1 1.0
CG D:PRO47 4.3 41.8 1.0
O C:HOH489 4.4 36.3 0.5
O D:HOH441 4.6 45.9 1.0
OE2 C:GLU76 4.6 49.7 1.0
O A:HOH448 4.7 43.3 1.0
CA A:HIS44 4.9 29.1 1.0
CD D:PRO47 5.0 39.5 1.0

Chlorine binding site 2 out of 5 in 4nu7

Go back to Chlorine Binding Sites List in 4nu7
Chlorine binding site 2 out of 5 in the 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:46.7
occ:0.50
 O1 A:SO4308 2.0 58.7 0.5
O4 A:SO4308 2.6 55.9 0.5
S A:SO4308 2.8 61.4 0.5
NH2 A:ARG112 3.1 66.5 1.0
O A:HOH413 3.2 30.0 1.0
CD A:ARG112 3.3 51.1 1.0
O2 A:SO4308 3.5 54.4 0.5
CZ A:ARG112 3.9 65.4 1.0
NE A:ARG112 4.0 57.7 1.0
NH2 A:ARG116 4.0 37.6 0.6
O3 A:SO4308 4.1 52.8 0.5
CB A:GLN82 4.1 36.5 1.0
CG A:ARG112 4.3 42.7 1.0
N A:GLN82 4.3 28.9 1.0
CB A:ILE81 4.4 25.8 1.0
NE A:ARG116 4.5 34.3 0.6
O A:GLU78 4.6 30.3 1.0
CZ A:ARG116 4.7 35.1 0.6
CG2 A:ILE81 4.7 26.3 1.0
CA A:GLN82 4.7 30.1 1.0
O A:HOH430 4.7 47.9 1.0

Chlorine binding site 3 out of 5 in 4nu7

Go back to Chlorine Binding Sites List in 4nu7
Chlorine binding site 3 out of 5 in the 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:78.5
occ:1.00
 OE2 B:GLU188 2.5 85.6 1.0
CD B:GLU188 3.6 80.0 1.0
CA B:GLY187 3.8 33.2 1.0
O B:HOH426 4.0 36.6 1.0
C B:GLY187 4.2 35.8 1.0
OE1 B:GLU188 4.2 95.7 1.0
CG B:GLU188 4.5 64.3 1.0
N B:GLY187 4.6 31.6 1.0
O B:GLY187 4.6 37.0 1.0
N B:GLU188 4.6 36.7 1.0

Chlorine binding site 4 out of 5 in 4nu7

Go back to Chlorine Binding Sites List in 4nu7
Chlorine binding site 4 out of 5 in the 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:66.2
occ:1.00
 NH1 B:ARG116 3.2 62.2 1.0
CG B:ARG116 3.5 54.1 1.0
CD B:ARG116 3.5 57.8 1.0
CB B:ARG116 3.7 49.4 1.0
CB B:ALA85 3.7 39.4 1.0
CZ B:ARG116 4.1 62.1 1.0
NE B:ARG116 4.3 64.4 1.0
NE C:ARG112 4.3 61.2 1.0
CD C:ARG112 4.3 59.9 1.0
O B:ARG116 4.6 45.9 1.0
CA B:ARG116 4.6 47.1 1.0
O C:HOH447 4.6 49.5 1.0
C B:ALA85 4.8 39.7 1.0
CA B:ALA85 4.8 38.8 1.0
CZ C:ARG112 4.9 60.5 1.0

Chlorine binding site 5 out of 5 in 4nu7

Go back to Chlorine Binding Sites List in 4nu7
Chlorine binding site 5 out of 5 in the 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:63.6
occ:1.00
 OG1 C:THR218 3.4 31.4 1.0
NH1 C:ARG221 3.4 34.7 1.0
CG2 C:THR218 3.8 32.1 1.0
CD C:ARG221 3.9 36.1 1.0
CB C:THR218 4.0 29.7 1.0
CA C:THR218 4.3 29.4 1.0
CZ C:ARG221 4.3 36.2 1.0
NE C:ARG221 4.4 37.1 1.0
O C:HOH419 4.9 32.4 1.0
O C:HOH497 4.9 56.4 1.0
CG C:ARG221 4.9 33.9 1.0

Reference:

G.Minasov, J.Ruan, H.Ngo, L.Shuvalova, I.Dubrovska, K.Flores, D.Shanmugam, D.Roos, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.05 Angstrom Crystal Structure of Ribulose-Phosphate 3-Epimerase From Toxoplasma Gondii. To Be Published.
Page generated: Thu Jul 25 23:01:57 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy