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Chlorine in PDB 4o8r: Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate

Enzymatic activity of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate

All present enzymatic activity of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate:
4.1.1.23;

Protein crystallography data

The structure of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate, PDB code: 4o8r was solved by A.A.Fedorov, E.V.Fedorov, K.K.Chan, J.A.Gerlt, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.19 / 2.29
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 147.899, 101.800, 192.845, 90.00, 91.59, 90.00
R / Rfree (%) 20.3 / 23.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate (pdb code 4o8r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate, PDB code: 4o8r:

Chlorine binding site 1 out of 1 in 4o8r

Go back to Chlorine Binding Sites List in 4o8r
Chlorine binding site 1 out of 1 in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6- Dihydrouridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:78.3
occ:0.50
OH A:TYR37 3.2 53.6 1.0
CB A:ALA212 3.5 49.7 1.0
C A:ALA212 4.1 49.7 1.0
CZ A:TYR37 4.2 51.5 1.0
N A:ALA213 4.3 50.7 1.0
O A:ALA212 4.4 48.5 1.0
CA A:ALA212 4.4 49.0 1.0
CE1 A:TYR37 4.4 50.4 1.0
CA A:ALA213 4.7 51.0 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, K.K.Chan, J.A.Gerlt, S.C.Almo. Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Methanobacterium Thermoautotrophicum Complexed with 5,6-Dihydrouridine 5'-Monophosphate To Be Published.
Page generated: Fri Jul 11 19:54:51 2025

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