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Chlorine in PDB 4ob6: Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa

Protein crystallography data

The structure of Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa, PDB code: 4ob6 was solved by S.Dou, X.D.Kong, B.D.Ma, Q.Chen, J.H.Zhou, J.H.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.74 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.438, 95.438, 88.297, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa (pdb code 4ob6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa, PDB code: 4ob6:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4ob6

Go back to Chlorine Binding Sites List in 4ob6
Chlorine binding site 1 out of 3 in the Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:34.4
occ:0.72
CL A:S2T401 0.0 34.4 0.7
C06 A:S2T401 1.7 31.6 0.7
C01 A:S2T401 2.7 35.6 0.7
C05 A:S2T401 2.7 28.8 0.7
C07 A:S2T401 3.2 31.5 0.7
C09 A:S2T401 3.3 28.4 0.7
CA A:GLY87 3.5 20.6 1.0
O14 A:S2T401 3.6 35.0 0.7
CD2 A:LEU36 3.7 21.6 1.0
O15 A:S2T401 3.8 29.2 0.7
CD1 A:LEU36 3.9 21.5 1.0
CD2 A:LEU290 3.9 20.2 1.0
C02 A:S2T401 4.0 31.4 0.7
C04 A:S2T401 4.0 30.9 0.7
N A:GLY87 4.1 18.0 1.0
CG A:LEU36 4.3 20.2 1.0
CD1 A:LEU91 4.4 31.9 1.0
C03 A:S2T401 4.5 32.4 0.7
O08 A:S2T401 4.6 33.8 0.7
C A:GLY87 4.6 21.4 1.0
CB A:LEU91 4.8 21.0 1.0
C A:GLY86 4.9 18.6 1.0
CB A:LEU36 4.9 17.7 1.0
O A:GLY87 5.0 19.8 1.0

Chlorine binding site 2 out of 3 in 4ob6

Go back to Chlorine Binding Sites List in 4ob6
Chlorine binding site 2 out of 3 in the Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:38.8
occ:1.00
CL A:S2T402 0.0 38.8 1.0
C06 A:S2T402 1.8 37.3 1.0
C01 A:S2T402 2.7 32.6 1.0
O08 A:S2T402 2.7 53.6 1.0
C05 A:S2T402 2.8 38.0 1.0
C07 A:S2T402 3.3 43.8 1.0
C10 A:S2T402 3.8 46.5 1.0
C01 A:S2T401 3.9 35.6 0.7
CD1 A:LEU36 3.9 21.5 1.0
CA A:LEU36 3.9 16.6 1.0
C02 A:S2T402 4.0 35.9 1.0
C04 A:S2T402 4.1 36.7 1.0
C12 A:S2T402 4.1 43.0 1.0
CE1 A:PHE207 4.1 31.4 1.0
CB A:LEU36 4.2 17.7 1.0
CG1 A:VAL35 4.2 26.0 1.0
CZ A:PHE207 4.3 29.4 1.0
N A:LEU36 4.3 21.0 1.0
C02 A:S2T401 4.3 31.4 0.7
C09 A:S2T402 4.4 47.7 1.0
C03 A:S2T402 4.5 33.2 1.0
O A:VAL35 4.6 21.6 1.0
C A:VAL35 4.6 23.2 1.0
CB A:ALA39 4.7 21.1 1.0
CG A:LEU36 4.7 20.2 1.0
O15 A:S2T402 4.7 42.2 1.0
O11 A:S2T402 4.9 60.5 1.0
C06 A:S2T401 4.9 31.6 0.7

Chlorine binding site 3 out of 3 in 4ob6

Go back to Chlorine Binding Sites List in 4ob6
Chlorine binding site 3 out of 3 in the Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Complex Structure of Esterase Rppe S159A/W187H and Substrate (S)-Ac- Cpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:38.8
occ:1.00
CL A:S2T403 0.0 38.8 1.0
C06 A:S2T403 1.7 37.2 1.0
C01 A:S2T403 2.7 35.8 1.0
C05 A:S2T403 2.8 28.1 1.0
O08 A:S2T403 3.0 45.5 1.0
C07 A:S2T403 3.3 37.9 1.0
CE1 A:HIS314 3.8 22.9 1.0
C02 A:S2T403 4.0 31.6 1.0
C04 A:S2T403 4.1 34.5 1.0
C10 A:S2T403 4.1 41.0 1.0
CG2 A:THR275 4.2 19.5 1.0
C09 A:S2T403 4.3 29.3 1.0
O15 A:S2T403 4.3 29.9 1.0
C03 A:S2T403 4.5 32.8 1.0
ND1 A:HIS314 4.6 24.3 1.0
O11 A:S2T403 4.7 45.8 1.0
NE2 A:HIS314 4.8 22.4 1.0
CG A:PRO247 4.8 20.3 1.0
OG1 A:THR275 4.9 20.4 1.0
CB A:THR275 4.9 20.9 1.0
C12 A:S2T403 4.9 41.3 1.0
CB A:PRO247 5.0 19.9 1.0

Reference:

S.Dou, X.D.Kong, B.D.Ma, Q.Chen, J.Zhang, J.H.Zhou, J.H.Xu. Crystal Structures of Pseudomonas Putida Esterase Reveal the Functional Role of Residues 187 and 287 in Substrate Binding and Chiral Recognition Biochem.Biophys.Res.Commun. V. 446 1145 2014.
ISSN: ISSN 0006-291X
PubMed: 24680822
DOI: 10.1016/J.BBRC.2014.03.072
Page generated: Thu Jul 25 23:20:19 2024

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