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Chlorine in PDB 4occ: Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48

Protein crystallography data

The structure of Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48, PDB code: 4occ was solved by X.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 56.584, 98.785, 106.819, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48 (pdb code 4occ). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48, PDB code: 4occ:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4occ

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Chlorine binding site 1 out of 6 in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:19.6
occ:1.00
CL2 A:2TZ201 0.0 19.6 1.0
C16 A:2TZ201 1.7 18.2 1.0
C15 A:2TZ201 2.6 19.6 1.0
C17 A:2TZ201 2.8 18.3 1.0
CB A:HIS96 3.5 17.0 1.0
CE2 A:TYR100 3.6 18.0 1.0
CG2 A:ILE99 3.6 15.1 1.0
O A:HIS96 3.6 16.1 1.0
CG A:HIS96 3.6 17.2 1.0
CA A:HIS96 3.6 16.5 1.0
CB A:ILE99 3.7 14.0 1.0
CD2 A:TYR100 3.7 17.9 1.0
C14 A:2TZ201 3.9 20.0 1.0
CD2 A:HIS96 4.0 17.2 1.0
C A:HIS96 4.0 16.2 1.0
C6 A:2TZ201 4.1 17.8 1.0
CD1 A:ILE99 4.1 13.0 1.0
CD2 A:LEU54 4.1 16.2 1.0
ND1 A:HIS96 4.2 17.6 1.0
CZ A:TYR100 4.3 18.5 1.0
CG1 A:ILE99 4.5 14.5 1.0
N A:TYR100 4.5 14.2 1.0
C13 A:2TZ201 4.5 18.7 1.0
CG A:TYR100 4.6 16.0 1.0
NE2 A:HIS96 4.7 17.2 1.0
OH A:TYR100 4.7 19.1 1.0
CE1 A:HIS96 4.8 18.1 1.0
CA A:ILE99 4.8 14.3 1.0
N A:HIS96 4.9 18.1 1.0
C A:ILE99 4.9 14.2 1.0
O A:HOH363 5.0 31.1 1.0

Chlorine binding site 2 out of 6 in 4occ

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Chlorine binding site 2 out of 6 in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:19.6
occ:1.00
CL1 A:2TZ201 0.0 19.6 1.0
C10 A:2TZ201 1.7 17.3 1.0
C9 A:2TZ201 2.7 16.7 1.0
C11 A:2TZ201 2.7 16.1 1.0
CG2 A:ILE99 3.8 15.1 1.0
CE2 A:PHE86 3.8 19.1 1.0
CD1 A:ILE61 3.8 15.0 1.0
CZ A:PHE86 3.9 17.6 1.0
CD1 A:LEU57 3.9 15.7 1.0
C8 A:2TZ201 4.0 18.1 1.0
C12 A:2TZ201 4.0 17.6 1.0
CB A:LEU57 4.0 14.8 1.0
CZ A:PHE91 4.2 15.1 1.0
CD2 A:LEU57 4.3 18.6 1.0
CG A:LEU57 4.3 16.1 1.0
CD1 A:ILE103 4.4 13.1 1.0
CE1 A:PHE91 4.4 14.9 1.0
C7 A:2TZ201 4.5 16.7 1.0
C A:LEU57 4.9 13.8 1.0
CG1 A:ILE103 4.9 12.8 1.0

Chlorine binding site 3 out of 6 in 4occ

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Chlorine binding site 3 out of 6 in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:19.9
occ:1.00
CL2 C:2TZ201 0.0 19.9 1.0
C16 C:2TZ201 1.7 19.6 1.0
C15 C:2TZ201 2.5 19.6 1.0
C17 C:2TZ201 2.7 19.0 1.0
CB C:HIS96 3.4 20.0 1.0
CG C:HIS96 3.5 20.2 1.0
CA C:HIS96 3.5 20.4 1.0
O C:HIS96 3.5 20.4 1.0
CD2 C:TYR100 3.7 22.4 1.0
CE2 C:TYR100 3.8 22.8 1.0
CB C:ILE99 3.8 15.7 1.0
C14 C:2TZ201 3.8 20.2 1.0
CG2 C:ILE99 3.8 15.2 1.0
CD2 C:HIS96 3.9 20.2 1.0
CD2 C:LEU54 3.9 18.2 1.0
ND1 C:HIS96 4.0 20.4 1.0
C C:HIS96 4.0 20.4 1.0
C6 C:2TZ201 4.0 18.9 1.0
CD1 C:ILE99 4.0 15.9 1.0
C13 C:2TZ201 4.4 19.9 1.0
CG1 C:ILE99 4.5 16.2 1.0
NE2 C:HIS96 4.5 19.7 1.0
CE1 C:HIS96 4.6 20.6 1.0
N C:HIS96 4.7 21.2 1.0
CD1 C:LEU54 4.7 18.0 1.0
N C:TYR100 4.7 15.6 1.0
CG C:TYR100 4.8 20.0 1.0
O C:HOH414 4.8 36.9 1.0
CZ C:TYR100 4.9 23.3 1.0
CG C:LEU54 5.0 16.8 1.0
CD1 C:ILE19 5.0 31.3 1.0

Chlorine binding site 4 out of 6 in 4occ

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Chlorine binding site 4 out of 6 in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:19.7
occ:1.00
CL1 C:2TZ201 0.0 19.7 1.0
C10 C:2TZ201 1.7 17.8 1.0
C11 C:2TZ201 2.7 17.3 1.0
C9 C:2TZ201 2.7 17.5 1.0
CD1 C:ILE61 3.6 13.7 1.0
CG2 C:ILE99 3.9 15.2 1.0
C12 C:2TZ201 4.0 16.9 1.0
CD1 C:LEU57 4.0 18.4 1.0
CB C:LEU57 4.0 15.3 1.0
C8 C:2TZ201 4.0 18.4 1.0
CE2 C:PHE86 4.0 17.6 1.0
CZ C:PHE86 4.1 17.4 1.0
CZ C:PHE91 4.2 12.6 1.0
CE1 C:PHE91 4.3 14.6 1.0
CD1 C:ILE103 4.4 14.8 1.0
C7 C:2TZ201 4.5 17.4 1.0
CG C:LEU57 4.6 18.4 1.0
CD1 C:ILE99 4.9 15.9 1.0
CG1 C:ILE61 4.9 15.9 1.0
C C:LEU57 5.0 14.1 1.0

Chlorine binding site 5 out of 6 in 4occ

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Chlorine binding site 5 out of 6 in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl201

b:17.7
occ:1.00
CL2 E:2TZ201 0.0 17.7 1.0
C16 E:2TZ201 1.7 18.9 1.0
C15 E:2TZ201 2.6 19.1 1.0
C17 E:2TZ201 2.7 18.8 1.0
CE2 E:TYR100 3.5 16.3 1.0
CB E:HIS96 3.6 18.3 1.0
CA E:HIS96 3.7 17.5 1.0
CG E:HIS96 3.7 17.8 1.0
O E:HIS96 3.8 15.2 1.0
CD2 E:TYR100 3.8 14.7 1.0
CB E:ILE99 3.9 13.6 1.0
C14 E:2TZ201 3.9 19.9 1.0
CG2 E:ILE99 3.9 13.0 1.0
CZ E:TYR100 4.0 16.8 1.0
C6 E:2TZ201 4.0 20.1 1.0
CD2 E:HIS96 4.1 17.9 1.0
CD2 E:LEU54 4.1 15.1 1.0
ND1 E:HIS96 4.2 19.5 1.0
C E:HIS96 4.2 17.1 1.0
CD1 E:ILE99 4.2 15.3 1.0
OH E:TYR100 4.4 17.6 1.0
C13 E:2TZ201 4.5 19.7 1.0
CG E:TYR100 4.5 14.9 1.0
CE1 E:TYR100 4.6 15.3 1.0
CG1 E:ILE99 4.6 14.5 1.0
N E:TYR100 4.7 14.9 1.0
NE2 E:HIS96 4.7 18.4 1.0
CE1 E:HIS96 4.8 18.9 1.0
CD1 E:TYR100 4.8 14.2 1.0
N E:HIS96 4.9 19.5 1.0

Chlorine binding site 6 out of 6 in 4occ

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Chlorine binding site 6 out of 6 in the Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Co-Crystal Structure of MDM2(17-111) in Complex with Compound 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl201

b:20.5
occ:1.00
CL1 E:2TZ201 0.0 20.5 1.0
C10 E:2TZ201 1.8 19.8 1.0
C9 E:2TZ201 2.7 18.5 1.0
C11 E:2TZ201 2.8 20.0 1.0
CG2 E:ILE99 3.8 13.0 1.0
CB E:LEU57 3.8 13.4 1.0
CD1 E:ILE61 3.9 11.8 1.0
CD1 E:LEU57 3.9 14.4 1.0
CZ E:PHE86 4.0 15.5 1.0
CE2 E:PHE86 4.0 15.8 1.0
C8 E:2TZ201 4.0 20.3 1.0
C12 E:2TZ201 4.1 19.5 1.0
CZ E:PHE91 4.4 15.1 1.0
CG E:LEU57 4.4 13.9 1.0
CE1 E:PHE91 4.6 15.2 1.0
C7 E:2TZ201 4.6 20.6 1.0
CD1 E:ILE103 4.6 15.4 1.0
CD2 E:LEU57 5.0 15.6 1.0
C E:LEU57 5.0 13.8 1.0

Reference:

A.Z.Gonzalez, Z.Li, H.P.Beck, J.Canon, A.Chen, D.Chow, J.Duquette, J.Eksterowicz, B.M.Fox, J.Fu, X.Huang, J.Houze, L.Jin, Y.Li, Y.Ling, M.C.Lo, A.M.Long, L.R.Mcgee, J.Mcintosh, J.D.Oliner, T.Osgood, Y.Rew, A.Y.Saiki, P.Shaffer, S.Wortman, P.Yakowec, X.Yan, Q.Ye, D.Yu, X.Zhao, J.Zhou, S.H.Olson, D.Sun, J.C.Medina. Novel Inhibitors of the MDM2-P53 Interaction Featuring Hydrogen Bond Acceptors As Carboxylic Acid Isosteres. J.Med.Chem. V. 57 2963 2014.
ISSN: ISSN 0022-2623
PubMed: 24601644
DOI: 10.1021/JM401911V
Page generated: Fri Jul 11 19:59:49 2025

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