Chlorine in PDB 4odn: Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide

All present enzymatic activity of Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide:
5.2.1.8;

The structure of Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide, PDB code: 4odn was solved by E.M.Quistgaard, C.Low, P.Nordlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.41 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.830, 40.550, 53.220, 90.00, 91.24, 90.00
R / Rfree (%)	17.6 / 19.8

The structure of Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide (pdb code 4odn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide, PDB code: 4odn:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:34.2 occ:1.00 N A:ILE37 3.1 10.0 1.0 O3 A:GOL204 3.1 53.6 1.0 C3 A:GOL204 3.1 53.5 1.0 CA A:LEU36 3.4 7.8 1.0 O1 A:GOL204 3.5 53.1 1.0 CB A:LEU36 3.6 10.8 1.0 C1 A:GOL204 3.6 52.7 1.0 C A:LEU36 3.7 10.3 1.0 CG1 A:ILE37 3.8 10.4 1.0 CG2 A:ILE37 3.9 11.1 1.0 C2 A:GOL204 3.9 53.3 1.0 CD2 A:LEU36 3.9 14.8 1.0 CB A:ILE37 4.1 9.8 1.0 CA A:ILE37 4.1 8.9 1.0 O2 A:GOL204 4.3 54.8 1.0 CG A:LEU36 4.3 13.2 1.0 CD2 A:LEU40 4.7 10.0 1.0 CD1 A:ILE37 4.7 11.4 1.0 O A:ASN35 4.7 14.6 1.0 N A:LEU36 4.8 8.6 1.0 O A:LEU36 4.9 10.8 1.0 OH A:TYR63 5.0 33.5 1.0

Chlorine binding site 2 out of 2 in the Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl206 b:38.2 occ:1.00 OG1 A:THR114 2.8 14.6 1.0 O A:HOH355 2.9 35.6 1.0 O A:GLU112 3.2 21.3 1.0 N A:THR114 3.5 10.2 1.0 CG A:GLU109 3.6 49.1 1.0 N A:GLU109 3.6 25.6 1.0 O A:ALA107 3.7 18.0 1.0 CB A:GLU109 3.7 38.3 1.0 CB A:THR114 3.8 11.9 1.0 CD A:GLU109 3.9 59.1 1.0 OE1 A:GLU109 3.9 63.8 1.0 O A:HOH406 3.9 30.1 1.0 C A:GLU112 3.9 19.1 1.0 C A:ALA107 4.1 18.3 1.0 C A:VAL113 4.1 11.0 1.0 C A:VAL108 4.2 25.7 1.0 CA A:THR114 4.2 10.7 1.0 CA A:VAL113 4.2 11.2 1.0 CA A:GLU109 4.3 28.4 1.0 CA A:VAL108 4.3 22.2 1.0 N A:VAL113 4.4 13.1 1.0 CB A:GLU112 4.4 26.6 1.0 N A:VAL108 4.4 19.2 1.0 CB A:ALA107 4.5 21.2 1.0 OE2 A:GLU109 4.6 61.3 1.0 CA A:GLU112 4.9 20.1 1.0 CA A:ALA107 4.9 18.5 1.0 O A:GLU109 4.9 22.0 1.0 O A:VAL108 5.0 24.9 1.0

E.M.Quistgaard, C.Low, P.Nordlund. Structure of Slyd From Thermus Thermophilus in Complex with S2-Plus Peptide To Be Published.