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Chlorine in PDB 4orn: Blue Fluorescent Protein MKALAMA1

Protein crystallography data

The structure of Blue Fluorescent Protein MKALAMA1, PDB code: 4orn was solved by R.B.Vegh, D.A.Bloch, A.S.Bommarius, M.Verkhovsky, S.Pletnev, H.Iwai, A.V.Bochenkova, K.M.Solntsev, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.66 / 1.71
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.510, 83.460, 92.240, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 18.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Blue Fluorescent Protein MKALAMA1 (pdb code 4orn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Blue Fluorescent Protein MKALAMA1, PDB code: 4orn:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4orn

Go back to Chlorine Binding Sites List in 4orn
Chlorine binding site 1 out of 4 in the Blue Fluorescent Protein MKALAMA1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Blue Fluorescent Protein MKALAMA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:58.8
occ:1.00
N A:GLY175 3.6 30.5 1.0
CA A:GLY174 3.9 32.5 1.0
C A:GLY174 4.3 34.9 1.0
CA A:GLY175 4.6 33.4 1.0

Chlorine binding site 2 out of 4 in 4orn

Go back to Chlorine Binding Sites List in 4orn
Chlorine binding site 2 out of 4 in the Blue Fluorescent Protein MKALAMA1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Blue Fluorescent Protein MKALAMA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:59.1
occ:1.00
N B:ASP129 3.5 25.3 1.0
OD1 B:ASN23 3.8 28.3 1.0
CG B:ASN23 3.9 30.1 1.0
CA B:ASN23 4.1 27.8 1.0
CA B:THR128 4.2 27.9 1.0
CA B:ASP129 4.2 27.1 1.0
OD1 B:ASP129 4.3 55.1 1.0
ND2 B:ASN23 4.3 29.9 1.0
CB B:THR128 4.3 27.2 1.0
C B:THR128 4.4 26.2 1.0
CB B:ASN23 4.4 28.1 1.0
CG2 B:THR128 4.8 31.1 1.0
C B:ASN23 4.9 30.6 1.0
CG B:ASP129 5.0 45.7 1.0

Chlorine binding site 3 out of 4 in 4orn

Go back to Chlorine Binding Sites List in 4orn
Chlorine binding site 3 out of 4 in the Blue Fluorescent Protein MKALAMA1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Blue Fluorescent Protein MKALAMA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:51.8
occ:1.00
O B:HOH533 3.1 36.6 1.0
N B:LYS209 3.3 22.3 1.0
CB B:SER208 3.8 24.9 1.0
CA B:SER208 3.9 21.1 1.0
O B:LYS209 4.0 29.0 1.0
C B:SER208 4.1 21.2 1.0
CA B:LYS209 4.2 24.1 1.0
CB B:LYS209 4.2 24.1 1.0
O B:HOH481 4.3 36.5 1.0
C B:LYS209 4.6 26.1 1.0
CG B:LYS209 4.6 27.4 1.0
OG B:SER208 5.0 23.5 1.0

Chlorine binding site 4 out of 4 in 4orn

Go back to Chlorine Binding Sites List in 4orn
Chlorine binding site 4 out of 4 in the Blue Fluorescent Protein MKALAMA1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Blue Fluorescent Protein MKALAMA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:60.5
occ:1.00
OG1 B:THR230 3.8 63.5 1.0
N B:THR230 3.8 39.9 1.0
CG2 B:ILE229 4.0 32.2 1.0
CA B:ILE229 4.1 29.0 1.0
O B:HOH472 4.3 29.1 1.0
O B:THR230 4.4 58.0 1.0
C B:ILE229 4.5 36.5 1.0
CB B:ILE229 4.5 26.4 1.0
O B:GLY228 4.7 33.7 1.0
CG1 B:ILE229 4.7 24.7 1.0
CA B:THR230 4.8 47.9 1.0
CB B:THR230 4.9 55.5 1.0

Reference:

R.B.Vegh, D.A.Bloch, A.S.Bommarius, M.Verkhovsky, S.Pletnev, H.Iwai, A.V.Bochenkova, K.M.Solntsev. Hidden Photoinduced Proton Transfer in the Blue Fluorescent Protein MKALAMA1 To Be Published.
Page generated: Thu Jul 25 23:32:53 2024

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