Atomistry » Chlorine » PDB 4oze-4p90 » 4p54
Atomistry »
  Chlorine »
    PDB 4oze-4p90 »
      4p54 »

Chlorine in PDB 4p54: Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site.

Enzymatic activity of Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site.

All present enzymatic activity of Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site.:
3.2.2.9;

Protein crystallography data

The structure of Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site., PDB code: 4p54 was solved by D.R.Ronning, V.Mishra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.73 / 1.65
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.207, 81.207, 67.440, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 17.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site. (pdb code 4p54). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site., PDB code: 4p54:

Chlorine binding site 1 out of 1 in 4p54

Go back to Chlorine Binding Sites List in 4p54
Chlorine binding site 1 out of 1 in the Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Helicobacter Pylori Mtan-D198N Mutant with 5'-Methylthioadenosine in the Active Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:20.6
occ:1.00
 O A:HOH681 2.9 37.4 1.0
OG A:SER156 3.1 18.6 1.0
N A:HIS155 3.2 14.9 1.0
O A:HOH700 3.3 29.3 1.0
O A:HOH645 3.5 30.3 1.0
CB A:SER156 3.6 20.4 1.0
N A:SER156 3.7 18.6 1.0
CB A:ARG159 3.8 16.6 1.0
CA A:VAL154 3.8 14.3 1.0
CD2 A:HIS155 3.8 14.8 1.0
C A:HIS155 4.0 19.2 1.0
C A:VAL154 4.0 15.2 1.0
CG1 A:VAL154 4.1 15.0 1.0
CA A:HIS155 4.1 17.1 1.0
CA A:SER156 4.3 18.3 1.0
O A:PHE153 4.3 15.6 1.0
CG A:ARG159 4.3 17.1 1.0
O A:HOH791 4.4 33.4 1.0
CB A:VAL154 4.4 12.8 1.0
NE2 A:HIS155 4.4 20.5 1.0
CG A:HIS155 4.5 15.8 1.0
O A:HOH652 4.6 25.5 1.0
O A:HIS155 4.6 19.5 1.0
O A:HOH926 4.7 41.7 1.0
CG2 A:VAL154 4.7 14.1 1.0
N A:VAL154 4.9 12.9 1.0
CB A:HIS155 4.9 16.0 1.0
O A:SER156 5.0 18.2 1.0

Reference:

V.Mishra, D.R.Ronning. Crystal Structures of the Helicobacter Pylori Mtan Enzyme Reveal Specific Interactions Between S-Adenosylhomocysteine and the 5'-Alkylthio Binding Subsite. Biochemistry V. 51 9763 2012.
ISSN: ISSN 0006-2960
PubMed: 23148563
DOI: 10.1021/BI301221K
Page generated: Thu Jul 25 23:50:43 2024

Last articles

Ca in 6ODD
Ca in 6OAZ
Ca in 6OBX
Ca in 6OCN
Ca in 6OB0
Ca in 6OBO
Ca in 6O9F
Ca in 6OAU
Ca in 6OAE
Ca in 6O9N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy