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Chlorine in PDB 4wad: Crystal Structure of Tarm with Udp-Glcnac

Enzymatic activity of Crystal Structure of Tarm with Udp-Glcnac

All present enzymatic activity of Crystal Structure of Tarm with Udp-Glcnac:
2.4.1.5; 2.4.1.52;

Protein crystallography data

The structure of Crystal Structure of Tarm with Udp-Glcnac, PDB code: 4wad was solved by C.Koc, T.Stehle, G.Xia, A.Peschel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.13 / 2.80
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 124.024, 124.024, 217.030, 90.00, 90.00, 120.00
R / Rfree (%) 25.2 / 29.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Tarm with Udp-Glcnac (pdb code 4wad). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Tarm with Udp-Glcnac, PDB code: 4wad:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4wad

Go back to Chlorine Binding Sites List in 4wad
Chlorine binding site 1 out of 2 in the Crystal Structure of Tarm with Udp-Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Tarm with Udp-Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:82.5
occ:1.00
OH A:TYR67 2.5 56.1 1.0
CZ A:TYR67 3.4 60.0 1.0
CE1 A:TYR67 3.5 47.3 1.0
CD A:LYS65 4.1 52.8 1.0
CE A:LYS65 4.2 52.9 1.0
CE2 A:TYR67 4.7 48.1 1.0
NZ A:LYS65 4.9 62.8 1.0
CD1 A:TYR67 4.9 44.4 1.0
NZ A:LYS3 4.9 39.7 1.0

Chlorine binding site 2 out of 2 in 4wad

Go back to Chlorine Binding Sites List in 4wad
Chlorine binding site 2 out of 2 in the Crystal Structure of Tarm with Udp-Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Tarm with Udp-Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:52.1
occ:1.00
N A:PHE82 3.4 44.4 1.0
CA A:HIS81 4.1 41.0 1.0
CB A:LYS83 4.1 34.4 1.0
N A:LYS83 4.2 56.6 1.0
C A:PHE82 4.2 42.9 1.0
C A:HIS81 4.3 44.2 1.0
CE A:LYS83 4.3 44.8 1.0
CA A:PHE82 4.3 45.7 1.0
CB A:HIS81 4.5 42.4 1.0
CB A:PHE82 4.7 39.5 1.0
O A:PHE82 4.7 42.3 1.0
CA A:LYS83 4.7 44.8 1.0
ND1 A:HIS81 4.8 47.7 1.0
CD2 A:PHE82 4.8 40.0 1.0
O A:LYS80 4.8 56.1 1.0
OH A:TYR174 4.9 49.0 1.0

Reference:

C.Koc, D.Gerlach, S.Beck, A.Peschel, G.Xia, T.Stehle. Structural and Enzymatic Analysis of Tarm From Staphylococcus Aureus Reveals An Oligomeric Protein Specific For the Glycosylation of Wall Teichoic Acid. J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X
PubMed: 25697358
DOI: 10.1074/JBC.M114.619924
Page generated: Fri Jul 11 22:26:14 2025

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