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Chlorine in PDB 4xad: Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac, PDB code: 4xad was solved by K.Wangkanont, L.L.Kiessling, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.11 / 1.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.002, 78.002, 37.709, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 16.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac (pdb code 4xad). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac, PDB code: 4xad:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4xad

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Chlorine binding site 1 out of 6 in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:15.5
occ:0.87
 O A:HOH399 3.1 28.9 1.0
O A:HOH418 3.1 12.9 1.0
N A:THR69 3.3 14.2 1.0
O A:HOH441 3.3 24.6 1.0
O A:HOH448 3.3 29.7 1.0
O A:THR69 3.4 15.4 1.0
C A:THR69 3.6 14.6 1.0
N A:ARG68 3.6 15.2 0.5
CA A:GLY67 3.6 14.9 1.0
C A:GLY67 3.6 15.5 1.0
OD1 A:ASN65 3.6 15.4 1.0
N A:ARG68 3.6 15.3 0.6
N A:GLY67 3.7 13.9 1.0
OG A:SER72 3.8 15.2 1.0
CA A:THR69 3.9 14.4 1.0
O A:HOH421 4.0 15.3 1.0
O A:GLY67 4.2 16.6 1.0
CB A:THR69 4.2 13.2 1.0
N A:PRO70 4.3 16.1 1.0
C A:ARG68 4.3 15.4 0.5
C A:ARG68 4.3 15.3 0.6
OD1 A:ASP66 4.3 11.9 1.0
CA A:ARG68 4.4 15.5 0.5
CA A:ARG68 4.4 15.5 0.6
O A:HOH416 4.7 7.9 1.0
CA A:PRO70 4.8 17.6 1.0
C A:ASP66 4.8 12.5 1.0
CG A:ASN65 4.8 14.7 1.0
OG1 A:THR69 4.9 13.3 1.0
N A:ASP66 4.9 11.9 1.0

Chlorine binding site 2 out of 6 in 4xad

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Chlorine binding site 2 out of 6 in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:18.6
occ:0.90
 O A:HOH488 2.8 38.3 1.0
OG A:SER24 3.1 16.1 1.0
N A:GLY26 3.2 11.5 1.0
CA A:GLY26 3.5 11.5 1.0
CB A:SER24 3.5 15.2 1.0
CA A:GLN121 3.6 17.3 1.0
CD1 A:ILE124 3.7 22.5 1.0
N A:GLN121 4.0 16.5 1.0
CB A:GLN121 4.0 20.7 1.0
CG A:GLN121 4.2 21.9 1.0
N A:LEU25 4.3 12.7 1.0
C A:VAL120 4.3 15.4 1.0
CG2 A:VAL120 4.3 16.6 1.0
O A:VAL120 4.3 15.3 1.0
CG1 A:ILE124 4.3 20.9 1.0
C A:LEU25 4.4 11.8 1.0
C A:SER24 4.4 12.8 1.0
C A:GLY26 4.5 10.6 1.0
CA A:SER24 4.6 13.6 1.0
N A:ASN27 4.6 10.8 1.0
CA A:LEU25 4.8 12.8 1.0
C A:GLN121 4.9 17.3 1.0
O A:SER24 4.9 12.8 1.0
O A:HOH466 4.9 19.3 1.0

Chlorine binding site 3 out of 6 in 4xad

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Chlorine binding site 3 out of 6 in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:32.1
occ:1.00
 O A:HOH435 3.1 20.8 1.0
ND2 A:ASN65 3.2 17.4 1.0
CB A:PRO79 3.7 14.0 1.0
CA A:PRO79 3.7 13.0 1.0
CB A:ASN65 3.9 13.9 1.0
N A:PRO79 4.0 13.5 1.0
CG A:ASN65 4.0 14.7 1.0
CD A:PRO79 4.2 15.3 1.0
O A:ASN65 4.3 11.9 1.0
CG A:PRO79 4.4 17.4 1.0
C A:ILE78 4.6 13.3 1.0
O A:ILE78 4.7 13.9 1.0
C A:ASN65 4.9 11.5 1.0
CA A:ASN65 4.9 12.1 1.0

Chlorine binding site 4 out of 6 in 4xad

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Chlorine binding site 4 out of 6 in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:21.1
occ:0.80
 O A:HOH310 2.9 34.7 1.0
N A:ILE88 3.3 14.4 1.0
O A:HOH436 3.4 25.8 1.0
CG1 A:ILE88 3.7 15.8 1.0
CA A:ASP87 3.8 17.0 1.0
NH1 A:ARG14 4.0 26.5 0.3
C A:ASP87 4.1 15.5 1.0
CZ A:PHE3 4.1 15.7 1.0
CB A:ALA11 4.1 18.4 1.0
O A:SER86 4.2 18.7 1.0
NH2 A:ARG14 4.2 24.8 0.7
OD2 A:ASP87 4.3 21.6 1.0
CG A:ASP87 4.3 22.1 1.0
CG2 A:ILE88 4.3 15.4 1.0
CB A:ILE88 4.3 14.3 1.0
CA A:ILE88 4.4 13.7 1.0
NE2 A:HIS15 4.4 24.2 1.0
OD1 A:ASP87 4.6 25.6 1.0
CD1 A:ILE88 4.6 16.8 1.0
CB A:ASP87 4.6 19.4 1.0
CE2 A:PHE3 4.7 14.9 1.0
CD2 A:HIS15 4.8 23.2 1.0
N A:ASP87 4.9 15.6 1.0
C A:SER86 4.9 16.9 1.0

Chlorine binding site 5 out of 6 in 4xad

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Chlorine binding site 5 out of 6 in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:28.5
occ:1.00
 O A:HOH392 3.3 31.9 1.0
CE2 A:PHE38 3.7 14.0 1.0
NZ A:LYS33 3.8 20.8 1.0
CZ3 A:TRP123 4.0 18.0 1.0
CE A:LYS33 4.2 18.3 1.0
CD A:LYS33 4.3 15.7 1.0
CD A:ARG5 4.3 19.4 1.0
CB A:ARG5 4.3 19.2 1.0
CZ A:PHE38 4.4 13.6 1.0
CD2 A:PHE38 4.6 13.9 1.0
O A:HOH364 4.7 33.0 1.0
CE3 A:TRP123 4.8 16.1 1.0
CG A:ARG5 4.8 19.3 1.0
NE A:ARG5 4.8 19.5 1.0
CH2 A:TRP123 4.9 18.4 1.0

Chlorine binding site 6 out of 6 in 4xad

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Chlorine binding site 6 out of 6 in the Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Hen Egg White Lysozyme in Complex with Galf- Glcnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:12.8
occ:1.00
 ND2 A:ASN113 3.4 12.0 1.0
CB A:ASN113 3.6 11.6 1.0
CA A:ALA110 3.8 10.0 1.0
CG1 A:VAL109 4.0 12.9 1.0
CG A:ASN113 4.0 11.8 1.0
O A:VAL109 4.0 10.2 1.0
CD A:ARG114 4.2 11.4 1.0
N A:ALA110 4.2 10.1 1.0
C A:VAL109 4.3 9.7 1.0
CG A:ARG114 4.4 12.2 1.0
CB A:ALA110 4.5 11.1 1.0
C A:ALA110 4.9 9.8 1.0
CA A:ASN113 4.9 11.5 1.0
O A:ALA110 4.9 10.8 1.0
O A:HOH334 5.0 15.7 1.0
CB A:VAL109 5.0 11.7 1.0

Reference:

K.Wangkanont, L.L.Kiessling. Crystal Structure of Hen Egg White Lysozyme in Complex with Galf-Glcnac, An O-Linked Disaccharide Core From Trypanosoma Cruzi To Be Published.
Page generated: Fri Jul 11 22:50:34 2025

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