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Chlorine in PDB 4y7d: Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita

Protein crystallography data

The structure of Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita, PDB code: 4y7d was solved by M.E.Cuff, J.Osipiuk, J.Holowicki, M.Endres, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.10 / 1.68
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.404, 75.394, 126.536, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 18.7

Other elements in 4y7d:

The structure of Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita (pdb code 4y7d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita, PDB code: 4y7d:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4y7d

Go back to Chlorine Binding Sites List in 4y7d
Chlorine binding site 1 out of 2 in the Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:21.9
occ:1.00
N A:THR274 3.1 20.6 1.0
OG1 A:THR274 3.2 21.7 1.0
NE A:ARG186 3.2 24.8 1.0
CA A:ALA277 3.6 19.2 1.0
CG2 A:VAL280 3.7 22.1 1.0
CA A:GLY273 3.7 19.9 1.0
CD A:ARG186 3.8 24.9 1.0
CB A:ALA277 3.8 19.7 1.0
CG2 A:THR274 3.8 23.7 1.0
CB A:THR274 3.8 21.5 1.0
N A:ALA277 3.9 19.7 1.0
C A:GLY273 3.9 20.6 1.0
CB A:HIS281 4.0 20.7 1.0
CA A:THR274 4.0 20.8 1.0
CA A:HIS281 4.1 21.4 1.0
CZ A:ARG186 4.1 25.8 1.0
N A:HIS281 4.2 21.1 1.0
NH1 A:ARG186 4.2 26.2 1.0
CG A:ARG186 4.3 25.4 1.0
O A:ALA272 4.3 24.8 1.0
CD2 A:HIS281 4.4 22.4 1.0
C A:VAL280 4.5 21.6 1.0
CG A:HIS281 4.6 22.3 1.0
C A:LEU276 4.6 19.4 1.0
O A:THR274 4.6 19.1 1.0
C A:THR274 4.7 20.2 1.0
O A:VAL280 4.8 22.2 1.0
C A:ALA277 4.9 18.9 1.0
N A:GLY273 4.9 21.4 1.0
O A:LEU276 5.0 19.3 1.0

Chlorine binding site 2 out of 2 in 4y7d

Go back to Chlorine Binding Sites List in 4y7d
Chlorine binding site 2 out of 2 in the Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:20.9
occ:1.00
NE B:ARG186 3.1 21.2 1.0
OG1 B:THR274 3.2 20.1 1.0
N B:THR274 3.2 20.9 1.0
CA B:ALA277 3.6 16.9 1.0
CD B:ARG186 3.7 20.9 1.0
CG2 B:VAL280 3.7 17.9 1.0
CA B:GLY273 3.8 21.0 1.0
CG2 B:THR274 3.8 21.2 1.0
CB B:THR274 3.8 20.6 1.0
CB B:ALA277 3.9 16.8 1.0
CB B:HIS281 4.0 20.5 1.0
N B:ALA277 4.0 17.4 1.0
C B:GLY273 4.0 21.4 1.0
CA B:THR274 4.1 20.4 1.0
CA B:HIS281 4.1 20.0 1.0
CZ B:ARG186 4.2 24.1 1.0
N B:HIS281 4.2 20.1 1.0
CG B:ARG186 4.3 20.2 1.0
CD2 B:HIS281 4.3 24.6 1.0
NH1 B:ARG186 4.3 25.4 1.0
O B:ALA272 4.5 22.8 1.0
CG B:HIS281 4.5 22.5 1.0
O B:THR274 4.6 17.8 1.0
C B:VAL280 4.6 19.4 1.0
C B:LEU276 4.6 18.5 1.0
C B:THR274 4.7 18.6 1.0
C B:ALA277 4.8 17.4 1.0
O B:VAL280 4.9 19.7 1.0
N B:GLY273 4.9 20.5 1.0

Reference:

M.E.Cuff, J.Osipiuk, J.Holowicki, M.Endres, A.Joachimiak. Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita. To Be Published.
Page generated: Fri Jul 26 03:52:08 2024

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