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Chlorine in PDB 4yv3: Trimeric Crystal Structure of Vimentin COIL1B Fragment

Protein crystallography data

The structure of Trimeric Crystal Structure of Vimentin COIL1B Fragment, PDB code: 4yv3 was solved by A.A.Chernyatina, S.V.Strelkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.38 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.060, 60.950, 48.900, 90.00, 104.33, 90.00
R / Rfree (%) 25.5 / 29.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Trimeric Crystal Structure of Vimentin COIL1B Fragment (pdb code 4yv3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Trimeric Crystal Structure of Vimentin COIL1B Fragment, PDB code: 4yv3:

Chlorine binding site 1 out of 1 in 4yv3

Go back to Chlorine Binding Sites List in 4yv3
Chlorine binding site 1 out of 1 in the Trimeric Crystal Structure of Vimentin COIL1B Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Trimeric Crystal Structure of Vimentin COIL1B Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:71.1
occ:1.00
NH1 B:ARG217 2.5 41.4 0.1
NH2 B:ARG217 2.5 42.6 0.1
CZ B:ARG217 2.8 40.9 0.1
CD1 A:LEU220 3.7 49.9 1.0
CG C:ARG217 3.7 50.4 1.0
CB A:ARG217 3.8 34.1 1.0
CA A:ARG217 3.8 40.3 1.0
CD B:ARG217 4.0 41.0 0.3
CD2 B:LEU220 4.0 38.2 1.0
CA C:ARG217 4.1 30.5 1.0
NE B:ARG217 4.1 40.5 0.1
CG A:ARG217 4.1 45.1 1.0
CG B:ARG217 4.1 41.1 0.3
CB C:ARG217 4.1 37.2 1.0
CD C:ARG217 4.4 59.5 1.0
N A:ARG217 4.4 30.7 1.0
CD1 C:LEU220 4.4 55.6 1.0
CD A:ARG217 4.5 48.1 1.0
O C:ARG217 4.6 31.4 1.0
CB B:ARG217 4.6 40.9 0.1
CG A:LEU220 4.6 38.0 1.0
CB C:LEU220 4.7 23.1 1.0
CB A:LEU220 4.7 37.2 1.0
CB B:ARG217 4.8 42.0 0.7
C C:ARG217 4.8 44.0 1.0
CB B:ARG217 4.9 41.5 0.3
C A:ARG217 5.0 35.1 1.0
C A:ALA216 5.0 47.3 1.0

Reference:

A.A.Chernyatina, J.F.Hess, D.Guzenko, J.C.Voss, S.V.Strelkov. How to Study Intermediate Filaments in Atomic Detail. Meth. Enzymol. V. 568 3 2016.
ISSN: ISSN 1557-7988
PubMed: 26795465
DOI: 10.1016/BS.MIE.2015.09.024
Page generated: Fri Jul 11 23:30:00 2025

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