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Chlorine in PDB 5amo: Structure of A Mouse Olfactomedin-1 Disulfide-Linked Dimer of the Olfactomedin Domain and Part of the Coiled Coil

Protein crystallography data

The structure of Structure of A Mouse Olfactomedin-1 Disulfide-Linked Dimer of the Olfactomedin Domain and Part of the Coiled Coil, PDB code: 5amo was solved by M.F.Pronker, T.G.A.A.Bos, T.H.Sharp, D.M.Thies-Weesie, B.J.C.Janssen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.318 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 160.220, 43.940, 104.060, 90.00, 114.17, 90.00
R / Rfree (%) 23.7 / 25.78

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Mouse Olfactomedin-1 Disulfide-Linked Dimer of the Olfactomedin Domain and Part of the Coiled Coil (pdb code 5amo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of A Mouse Olfactomedin-1 Disulfide-Linked Dimer of the Olfactomedin Domain and Part of the Coiled Coil, PDB code: 5amo:

Chlorine binding site 1 out of 1 in 5amo

Go back to Chlorine Binding Sites List in 5amo
Chlorine binding site 1 out of 1 in the Structure of A Mouse Olfactomedin-1 Disulfide-Linked Dimer of the Olfactomedin Domain and Part of the Coiled Coil


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Mouse Olfactomedin-1 Disulfide-Linked Dimer of the Olfactomedin Domain and Part of the Coiled Coil within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1484

b:91.3
occ:1.00
ND2 B:ASN362 3.2 60.6 1.0
OD1 B:ASN362 3.5 54.3 1.0
CG B:ASN362 3.8 55.0 1.0
SG B:CYS227 4.1 80.7 1.0
O B:CYS409 4.4 60.4 1.0
C B:CYS409 4.6 60.2 1.0
CG B:LYS224 4.7 69.3 1.0
CA B:CYS409 4.7 60.7 1.0
CB B:LYS224 4.7 67.6 1.0
CB B:CYS227 4.7 70.5 1.0
CB B:CYS409 4.8 62.0 1.0
O B:LYS224 4.9 66.4 1.0
CD B:LYS224 5.0 68.7 1.0

Reference:

M.F.Pronker, T.G.A.A.Bos, T.H.Sharp, D.M.Thies-Weesie, B.J.C.Janssen. Olfactomedin-1 Has A V-Shaped Disulfide-Linked Tetrameric Structure. J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X
PubMed: 25903135
DOI: 10.1074/JBC.M115.653485
Page generated: Sat Jul 12 00:16:58 2025

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