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Chlorine in PDB 5b4u: Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate

Enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate

All present enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate:
1.1.1.30;

Protein crystallography data

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate, PDB code: 5b4u was solved by H.Kanazawa, M.Tsunoda, M.M.Hoque, K.Suzuki, T.Yamamoto, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.83 / 1.45
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.830, 62.830, 119.290, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 15.1

Other elements in 5b4u:

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate (pdb code 5b4u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate, PDB code: 5b4u:

Chlorine binding site 1 out of 1 in 5b4u

Go back to Chlorine Binding Sites List in 5b4u
Chlorine binding site 1 out of 1 in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Complexed with Nad+ and An Inhibitor Malonate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:12.2
occ:1.00
O A:HOH594 3.0 14.1 1.0
CD A:ARG260 4.8 12.9 1.0
CB A:ARG260 4.9 10.7 1.0

Reference:

H.Kanazawa, M.M.Hoque, M.Tsunoda, K.Suzuki, T.Yamamoto, G.Kawai, J.Kondo, A.Takenaka. Structural Insights Into the Catalytic Reaction Trigger and Inhibition of D-3-Hydroxybutyrate Dehydrogenase Acta Crystallogr.,Sect.F V. 72 507 2016.
ISSN: ESSN 2053-230X
PubMed: 27380367
DOI: 10.1107/S2053230X16007767
Page generated: Fri Jul 26 05:30:47 2024

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