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Chlorine in PDB 5bmt: Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution

Protein crystallography data

The structure of Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution, PDB code: 5bmt was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.21 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.750, 58.969, 165.462, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution (pdb code 5bmt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution, PDB code: 5bmt:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5bmt

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Chlorine binding site 1 out of 3 in the Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:47.2
occ:1.00
O A:HOH743 2.9 47.0 1.0
N A:SER103 3.0 16.0 1.0
OG A:SER103 3.1 25.1 0.5
OG A:SER103 3.6 21.5 0.5
CB A:SER102 3.6 15.3 1.0
CA A:SER102 3.7 15.0 1.0
CB A:SER103 3.7 19.5 0.5
CB A:SER103 3.7 20.9 0.5
C A:SER102 3.8 17.3 1.0
CA A:SER103 3.9 15.6 0.5
CA A:SER103 4.0 15.9 0.5
O A:HOH523 4.0 27.6 1.0
OG A:SER102 4.7 15.4 1.0
O A:SER103 4.7 16.2 1.0
C A:SER103 4.9 16.7 1.0
O A:HOH739 4.9 42.0 1.0

Chlorine binding site 2 out of 3 in 5bmt

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Chlorine binding site 2 out of 3 in the Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:38.8
occ:1.00
O B:HOH449 2.9 49.9 1.0
N B:TRP246 3.0 17.9 1.0
CA B:THR245 3.5 16.5 1.0
O B:TRP246 3.7 17.7 1.0
CB B:THR245 3.7 20.7 1.0
C B:THR245 3.7 17.9 1.0
CD1 B:TRP246 3.9 24.2 1.0
CA B:TRP246 3.9 17.7 1.0
CB B:TRP246 4.0 18.5 1.0
C B:TRP246 4.3 18.1 1.0
CG2 B:THR245 4.3 21.0 1.0
CG B:TRP246 4.4 20.2 1.0
O B:ALA244 4.6 24.6 1.0
O B:HOH417 4.7 49.4 1.0
OH B:TYR248 4.8 30.7 1.0
N B:THR245 4.8 17.4 1.0
OG1 B:THR245 4.9 20.8 1.0
CE1 B:TYR248 4.9 24.4 1.0
O B:THR245 5.0 16.1 1.0

Chlorine binding site 3 out of 3 in 5bmt

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Chlorine binding site 3 out of 3 in the Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of An Uncharacterized Protein (PARMER_03598) From Parabacteroides Merdae Atcc 43184 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl307

b:42.5
occ:1.00
O B:HOH545 2.9 27.1 1.0
O B:HOH724 3.0 59.8 1.0
N B:LYS107 3.1 13.8 1.0
O B:HOH475 3.6 34.6 1.0
CA B:ALA106 3.6 13.4 1.0
CB B:LYS107 3.7 16.1 1.0
CG B:LYS107 3.9 19.9 1.0
C B:ALA106 3.9 14.2 1.0
CA B:LYS107 4.0 13.9 1.0
CD B:LYS107 4.2 29.0 1.0
O B:LYS107 4.2 16.2 1.0
CB B:ALA106 4.3 14.4 1.0
O B:LEU105 4.4 14.8 1.0
C B:LYS107 4.6 15.1 1.0
NZ B:LYS107 4.7 41.5 1.0
O B:HOH689 4.7 63.5 1.0
N B:ALA106 4.8 13.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 12 00:26:10 2025

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