Atomistry » Chlorine » PDB 5boz-5bvf » 5bur
Atomistry »
  Chlorine »
    PDB 5boz-5bvf »
      5bur »

Chlorine in PDB 5bur: O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion

Enzymatic activity of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion

All present enzymatic activity of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion:
6.2.1.26;

Protein crystallography data

The structure of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion, PDB code: 5bur was solved by Y.Chen, Y.Sun, H.Song, Z.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.39 / 2.82
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 121.835, 121.835, 97.801, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 25.2

Other elements in 5bur:

The structure of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion (pdb code 5bur). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion, PDB code: 5bur:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5bur

Go back to Chlorine Binding Sites List in 5bur
Chlorine binding site 1 out of 6 in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:88.9
occ:1.00
 CD A:PRO17 3.4 82.5 1.0
N A:GLU18 3.7 84.2 1.0
CA A:THR16 3.8 77.3 1.0
N A:PRO17 3.8 79.5 1.0
C A:THR16 3.8 73.6 1.0
CB A:GLU18 4.0 88.0 1.0
CB A:THR16 4.2 72.4 1.0
CA A:GLU18 4.3 83.6 1.0
CG2 A:THR16 4.5 72.5 1.0
N A:ARG19 4.5 80.3 1.0
CG A:GLU18 4.5 82.1 1.0
O A:THR16 4.5 73.1 1.0
C A:GLU18 4.6 81.1 1.0
C A:PRO17 4.7 83.4 1.0
O A:LEU15 4.7 85.3 1.0
CG A:PRO17 4.7 81.0 1.0
CA A:PRO17 4.8 83.6 1.0
CG A:ARG19 4.9 70.8 1.0

Chlorine binding site 2 out of 6 in 5bur

Go back to Chlorine Binding Sites List in 5bur
Chlorine binding site 2 out of 6 in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:80.4
occ:1.00
 OG A:SER175 2.9 47.5 1.0
O A:PHE171 3.4 48.1 1.0
SG A:CYS317 3.4 54.6 1.0
CG A:ASN342 3.4 47.8 1.0
CB A:ASN342 3.5 52.0 1.0
CG A:PRO341 3.6 48.6 1.0
CB A:SER175 3.6 46.8 1.0
ND2 A:ASN342 3.7 47.7 1.0
CB A:PHE171 3.8 46.8 1.0
C A:PHE171 3.8 48.8 1.0
OD1 A:ASN342 3.8 52.0 1.0
CD A:PRO341 3.9 51.8 1.0
N A:ASN342 4.0 46.5 1.0
O A:PHE315 4.1 52.7 1.0
CB A:SER316 4.2 50.0 1.0
N A:SER172 4.3 43.1 1.0
CA A:PHE171 4.3 45.0 1.0
CA A:ASN342 4.4 48.0 1.0
N A:PRO341 4.6 45.1 1.0
CB A:PRO341 4.6 47.7 1.0
CG A:PHE171 4.7 48.5 1.0
O A:HOH604 4.7 47.2 1.0
C A:PRO341 4.7 47.1 1.0
CA A:SER172 4.7 37.6 1.0
CD1 A:PHE171 4.8 46.0 1.0
CA A:SER175 4.9 44.0 1.0
CA A:PRO341 4.9 47.9 1.0
N A:SER175 5.0 40.0 1.0

Chlorine binding site 3 out of 6 in 5bur

Go back to Chlorine Binding Sites List in 5bur
Chlorine binding site 3 out of 6 in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:0.2
occ:1.00
 O A:LYS420 3.8 0.0 1.0
C A:LYS420 4.4 0.9 1.0

Chlorine binding site 4 out of 6 in 5bur

Go back to Chlorine Binding Sites List in 5bur
Chlorine binding site 4 out of 6 in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:74.7
occ:1.00
 CA B:THR16 3.5 57.8 1.0
C B:THR16 3.7 59.6 1.0
CB B:THR16 3.8 55.9 1.0
N B:GLU18 4.0 70.9 1.0
N B:PRO17 4.1 63.1 1.0
CD B:PRO17 4.1 65.1 1.0
O B:THR16 4.1 62.6 1.0
CG2 B:THR16 4.4 51.3 1.0
N B:ARG19 4.4 65.8 1.0
CB B:GLU18 4.6 71.7 1.0
CA B:GLU18 4.6 71.6 1.0
C B:GLU18 4.7 72.1 1.0
O B:LEU15 4.7 72.3 1.0
N B:THR16 4.8 60.8 1.0
CG B:PRO17 4.9 59.9 1.0
CB B:ARG19 5.0 60.3 1.0
C B:PRO17 5.0 68.8 1.0

Chlorine binding site 5 out of 6 in 5bur

Go back to Chlorine Binding Sites List in 5bur
Chlorine binding site 5 out of 6 in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:93.5
occ:1.00
 O B:TYR209 3.3 59.2 1.0
O A:LEU178 3.5 55.8 1.0
CG2 B:ILE182 3.8 67.9 1.0
O B:THR183 4.4 74.9 1.0
C B:TYR209 4.4 57.2 1.0
C B:THR183 4.5 71.3 1.0
C A:LEU178 4.5 50.8 1.0
NH2 B:ARG19 4.5 74.7 1.0
CA B:GLU184 4.5 75.2 1.0
CB B:ILE182 4.6 59.8 1.0
N B:GLU184 4.6 74.4 1.0
N A:GLY181 4.8 49.3 1.0
CA A:GLY181 4.8 48.2 1.0
N B:THR183 4.9 64.8 1.0
CB B:TYR209 4.9 47.8 1.0
CA B:TYR209 4.9 52.9 1.0

Chlorine binding site 6 out of 6 in 5bur

Go back to Chlorine Binding Sites List in 5bur
Chlorine binding site 6 out of 6 in the O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of O-Succinylbenzoate Coenzyme A Synthetase (Mene) From Bacillus Subtilis, in Complex with Atp and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:96.3
occ:1.00
 O B:LEU178 3.4 68.7 1.0
O A:TYR209 3.6 59.8 1.0
NH1 A:ARG19 3.9 83.5 1.0
O A:THR183 3.9 76.7 1.0
C A:THR183 4.2 75.6 1.0
NH2 A:ARG19 4.3 90.4 1.0
C B:LEU178 4.4 64.9 1.0
N A:GLU184 4.5 78.2 1.0
CZ A:ARG19 4.6 87.5 1.0
CA A:GLU184 4.7 78.9 1.0
N B:GLY181 4.7 63.6 1.0
C A:TYR209 4.8 55.3 1.0
CG A:GLU184 4.8 88.5 1.0
O B:ASN179 4.8 72.2 1.0
CA B:GLY181 4.9 55.4 1.0
CA A:THR183 4.9 72.5 1.0
O B:ALA177 5.0 60.1 1.0

Reference:

Y.Chen, Y.Sun, H.Song, Z.Guo. Structural Basis For the Atp-Dependent Configuration of Adenylation Active Site in Bacillus Subtilis O-Succinylbenzoyl-Coa Synthetase J.Biol.Chem. V. 290 23971 2015.
ISSN: ESSN 1083-351X
PubMed: 26276389
DOI: 10.1074/JBC.M115.676304
Page generated: Sat Jul 12 00:32:52 2025

Last articles

Mg in 1S0P
Mg in 1S0O
Mg in 1S0M
Mg in 1RZZ
Mg in 1S00
Mg in 1RZH
Mg in 1RZR
Mg in 1RYH
Mg in 1RYF
Mg in 1RY5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy