Atomistry » Chlorine » PDB 5cb7-5cni » 5cgv
Atomistry »
  Chlorine »
    PDB 5cb7-5cni »
      5cgv »

Chlorine in PDB 5cgv: 2009 H1N1 Pa Endonuclease in Complex with L-742,001

Protein crystallography data

The structure of 2009 H1N1 Pa Endonuclease in Complex with L-742,001, PDB code: 5cgv was solved by G.Kumar, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.17
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.899, 73.899, 127.457, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 28.2

Other elements in 5cgv:

The structure of 2009 H1N1 Pa Endonuclease in Complex with L-742,001 also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2009 H1N1 Pa Endonuclease in Complex with L-742,001 (pdb code 5cgv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 2009 H1N1 Pa Endonuclease in Complex with L-742,001, PDB code: 5cgv:

Chlorine binding site 1 out of 1 in 5cgv

Go back to Chlorine Binding Sites List in 5cgv
Chlorine binding site 1 out of 1 in the 2009 H1N1 Pa Endonuclease in Complex with L-742,001


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2009 H1N1 Pa Endonuclease in Complex with L-742,001 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:57.9
occ:1.00
CL2 A:0N8303 0.0 57.9 1.0
C19 A:0N8303 1.8 45.7 1.0
C20 A:0N8303 2.8 44.5 1.0
C18 A:0N8303 2.8 41.6 1.0
CB A:LYS137 3.6 59.5 1.0
CD1 A:ILE138 3.8 70.3 1.0
CG A:LYS134 3.8 44.1 1.0
CG A:LYS137 3.9 63.5 1.0
O A:LYS134 4.0 35.8 1.0
NZ A:LYS134 4.0 45.9 1.0
C21 A:0N8303 4.1 42.8 1.0
C17 A:0N8303 4.1 39.7 1.0
O A:HOH445 4.1 40.7 1.0
CG1 A:ILE138 4.1 67.4 1.0
CE A:LYS134 4.2 44.0 1.0
N A:ILE138 4.2 63.9 1.0
CD A:LYS134 4.2 44.3 1.0
CA A:LYS134 4.3 38.1 1.0
C16 A:0N8303 4.6 39.7 1.0
C A:LYS134 4.6 38.7 1.0
C A:LYS137 4.6 59.3 1.0
CA A:LYS137 4.7 56.2 1.0
CB A:LYS134 4.7 41.5 1.0
CD A:LYS137 4.8 67.0 1.0
CA A:ILE138 4.9 67.6 1.0

Reference:

M.S.Song, G.Kumar, W.R.Shadrick, W.Zhou, T.Jeevan, Z.Li, P.J.Slavish, T.P.Fabrizio, S.W.Yoon, T.R.Webb, R.J.Webby, S.W.White. Identification and Characterization of Influenza Variants Resistant to A Viral Endonuclease Inhibitor. Proc. Natl. Acad. Sci. V. 113 3669 2016U.S.A..
ISSN: ESSN 1091-6490
PubMed: 26976575
DOI: 10.1073/PNAS.1519772113
Page generated: Sat Jul 12 00:48:11 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy