Chlorine in PDB 5cvp: Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571

Enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571

All present enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571:
3.5.1.88;

Protein crystallography data

The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571, PDB code: 5cvp was solved by H.P.T.Ngo, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.40 / 2.00
*Space group*	P 6₁ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	58.871, 58.871, 264.106, 90.00, 90.00, 120.00
*R / R_free (%)*	17.4 / 21.6

Other elements in 5cvp:

The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 also contains other interesting chemical elements:

Cadmium	(Cd)	5 atoms
Sodium	(Na)	2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 (pdb code 5cvp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571, PDB code: 5cvp:

Chlorine binding site 1 out of 1 in 5cvp

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Chlorine Binding Sites List in 5cvp

Chlorine binding site 1 out of 1 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl208 b:52.3 occ:1.00	CL	A:56F208	0.0	52.3	1.0
	C8	A:56F208	1.8	52.0	1.0
	C9	A:56F208	2.8	46.9	1.0
	C7	A:56F208	2.8	48.5	1.0
	N	A:GLY98	3.8	19.7	1.0
	CD	A:ARG106	4.0	30.9	1.0
	C6	A:56F208	4.1	49.5	1.0
	C10	A:56F208	4.1	47.6	1.0
	CA	A:GLY98	4.1	18.0	1.0
	CB	A:ARG106	4.2	24.1	1.0
	C	A:GLU97	4.3	22.2	1.0
	O	A:GLU97	4.5	21.7	1.0
	C5	A:56F208	4.6	47.4	1.0
	CG	A:ARG106	4.7	26.1	1.0
	CA	A:GLU97	4.9	21.1	1.0
	NE	A:ARG106	5.0	28.6	1.0

Reference:

H.P.T.Ngo, L.W.Kang. Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 To Be Published.

Page generated: Sat Jul 12 00:58:33 2025

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