Atomistry » Chlorine » PDB 5cu8-5d0x » 5d03
Atomistry »
  Chlorine »
    PDB 5cu8-5d0x »
      5d03 »

Chlorine in PDB 5d03: Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant

Enzymatic activity of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant

All present enzymatic activity of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant:
2.5.1.54;

Protein crystallography data

The structure of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant, PDB code: 5d03 was solved by L.C.Heyes, E.J.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.53 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.256, 135.622, 75.989, 90.00, 96.27, 90.00
R / Rfree (%) 16.2 / 19.7

Other elements in 5d03:

The structure of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant also contains other interesting chemical elements:

Manganese (Mn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant (pdb code 5d03). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant, PDB code: 5d03:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5d03

Go back to Chlorine Binding Sites List in 5d03
Chlorine binding site 1 out of 4 in the Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:53.7
occ:1.00
 OG1 A:THR102 3.2 31.8 1.0
NH2 A:ARG101 3.7 31.9 1.0
N A:THR102 3.7 26.3 1.0
NE A:ARG101 3.7 30.4 1.0
O A:HOH531 3.8 28.7 1.0
CB A:THR102 3.9 31.9 1.0
CZ A:ARG101 4.2 31.8 1.0
O A:HOH648 4.2 40.5 1.0
CA A:ARG101 4.4 23.2 1.0
CA A:THR102 4.5 29.0 1.0
C A:ARG101 4.6 25.8 1.0
CB A:ARG101 4.8 24.9 1.0
CD A:ARG101 4.8 28.6 1.0
O A:HOH698 5.0 42.6 1.0

Chlorine binding site 2 out of 4 in 5d03

Go back to Chlorine Binding Sites List in 5d03
Chlorine binding site 2 out of 4 in the Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:46.7
occ:1.00
 O C:TYR96 2.9 30.0 1.0
N C:LEU109 2.9 34.6 1.0
O C:ILE65 3.2 33.9 1.0
CA C:GLY108 3.3 39.3 1.0
CA C:PHE97 3.3 32.0 1.0
C C:PHE97 3.4 34.2 1.0
O C:PHE97 3.5 37.7 1.0
C C:GLY108 3.6 38.0 1.0
CH2 C:TRP106 3.7 43.1 1.0
C C:TYR96 3.8 27.5 1.0
CB C:LEU109 3.8 39.5 1.0
N C:ILE65 3.9 27.8 1.0
N C:PHE97 4.0 30.9 1.0
CA C:LEU109 4.0 36.2 1.0
CB C:SER64 4.0 28.8 1.0
C C:ILE65 4.2 31.1 1.0
CZ3 C:TRP106 4.2 43.2 1.0
N C:GLU98 4.2 34.3 1.0
CG C:LYS99 4.3 31.1 1.0
CZ2 C:TRP106 4.4 42.4 1.0
CA C:ILE65 4.5 29.0 1.0
CA C:SER64 4.5 28.1 1.0
CB C:PHE97 4.6 32.6 1.0
C C:SER64 4.6 28.2 1.0
CD C:LYS99 4.6 30.3 1.0
N C:GLY108 4.6 41.8 1.0
CD1 C:PHE97 4.6 29.6 1.0
CB C:ILE65 4.7 28.6 1.0
O C:GLY108 4.8 40.5 1.0
OG C:SER64 4.9 28.1 1.0

Chlorine binding site 3 out of 4 in 5d03

Go back to Chlorine Binding Sites List in 5d03
Chlorine binding site 3 out of 4 in the Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:51.7
occ:1.00
 O D:TYR96 2.9 26.6 1.0
N D:LEU109 2.9 33.3 1.0
O D:ILE65 3.0 32.6 1.0
CA D:GLY108 3.3 31.4 1.0
CA D:PHE97 3.4 33.2 1.0
C D:PHE97 3.4 33.7 1.0
O D:PHE97 3.5 32.6 1.0
C D:GLY108 3.6 32.1 1.0
CH2 D:TRP106 3.6 38.7 1.0
N D:ILE65 3.7 32.8 1.0
CB D:SER64 3.8 31.6 1.0
C D:TYR96 3.8 29.4 1.0
CB D:LEU109 3.9 36.4 1.0
C D:ILE65 3.9 33.0 1.0
CA D:LEU109 4.0 33.8 1.0
N D:PHE97 4.0 31.7 1.0
CZ3 D:TRP106 4.1 37.7 1.0
N D:GLU98 4.2 31.3 1.0
CZ2 D:TRP106 4.2 36.7 1.0
CA D:ILE65 4.3 33.8 1.0
CG D:LYS99 4.3 30.8 1.0
CA D:SER64 4.3 31.3 1.0
C D:SER64 4.4 32.8 1.0
OG D:SER64 4.6 33.3 1.0
CB D:ILE65 4.6 34.4 1.0
N D:GLY108 4.6 32.1 1.0
CB D:PHE97 4.7 34.8 1.0
CD D:LYS99 4.7 29.4 1.0
O D:GLY108 4.8 33.3 1.0
CD1 D:PHE97 4.8 31.7 1.0

Chlorine binding site 4 out of 4 in 5d03

Go back to Chlorine Binding Sites List in 5d03
Chlorine binding site 4 out of 4 in the Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl404

b:56.1
occ:1.00
 OG1 D:THR102 3.5 43.8 1.0
NH2 D:ARG101 3.6 45.4 1.0
NE D:ARG101 3.7 38.9 1.0
O D:HOH592 3.8 36.2 1.0
N D:THR102 3.9 39.9 1.0
CZ D:ARG101 4.1 42.9 1.0
CB D:THR102 4.2 42.2 1.0
O D:HOH609 4.2 42.6 1.0
CA D:ARG101 4.4 34.1 1.0
CA D:THR102 4.7 40.3 1.0
C D:ARG101 4.7 38.0 1.0
CB D:ARG101 4.8 33.2 1.0
CD D:ARG101 4.8 38.0 1.0

Reference:

L.C.Heyes, E.J.Parker. Neisseria Meningitidis 3 Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase VAL223ALA Variant at 1.84 Angstroms Resolution To Be Published.
Page generated: Sat Jul 12 01:03:02 2025

Last articles

Na in 4TR8
Na in 4TPU
Na in 4TR6
Na in 4TOG
Na in 4TOF
Na in 4TPR
Na in 4TMX
Na in 4TMW
Na in 4TME
Na in 4TMV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy