Atomistry » Chlorine » PDB 5cu8-5d0x » 5d0s
Atomistry »
  Chlorine »
    PDB 5cu8-5d0x »
      5d0s »

Chlorine in PDB 5d0s: Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib

Enzymatic activity of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib

All present enzymatic activity of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib:
3.4.25.1;

Protein crystallography data

The structure of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib, PDB code: 5d0s was solved by E.M.Huber, M.Groll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 135.020, 300.640, 144.310, 90.00, 113.02, 90.00
R / Rfree (%) 21.6 / 23.7

Other elements in 5d0s:

The structure of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib (pdb code 5d0s). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib, PDB code: 5d0s:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5d0s

Go back to Chlorine Binding Sites List in 5d0s
Chlorine binding site 1 out of 4 in the Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl302

b:35.5
occ:1.00
 OH H:TYR69 2.9 35.8 1.0
NH1 G:ARG111 3.0 33.7 1.0
ND2 G:ASN114 3.2 35.1 1.0
CE2 H:TYR69 3.7 36.1 1.0
CZ H:TYR69 3.7 36.0 1.0
CD G:ARG111 3.7 31.6 1.0
CB G:ASN114 3.8 35.0 1.0
CG G:ASN114 4.0 35.1 1.0
CZ G:ARG111 4.1 33.2 1.0
NE G:ARG111 4.3 32.4 1.0
CA G:ARG111 4.7 30.8 1.0
O G:HOH447 4.7 41.7 1.0
O G:ARG111 4.9 30.1 1.0
CE1 H:TYR69 5.0 36.5 1.0
CD2 H:TYR69 5.0 36.6 1.0

Chlorine binding site 2 out of 4 in 5d0s

Go back to Chlorine Binding Sites List in 5d0s
Chlorine binding site 2 out of 4 in the Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Cl203

b:50.3
occ:1.00
 NH2 N:ARG45 2.9 34.5 1.0
NH1 N:ARG45 3.1 32.9 1.0
NE2 N:GLN53 3.2 30.1 1.0
CZ N:ARG45 3.4 32.5 1.0
CG2 N:THR31 3.6 36.9 1.0
C46 N:3BV201 4.1 29.8 1.0
C45 N:3BV201 4.2 28.2 1.0
CB N:ALA49 4.2 30.6 1.0
CD N:GLN53 4.3 29.6 1.0
CG N:GLN53 4.5 29.0 1.0
O N:HOH310 4.5 48.7 1.0
OD1 H:ASP120 4.6 68.3 1.0
O N:ASP32 4.7 34.7 1.0
CA N:ALA49 4.7 30.4 1.0
C44 N:3BV201 4.7 28.8 1.0
NE N:ARG45 4.8 31.0 1.0
O H:THR119 4.8 39.7 1.0
CB a:TYR228 4.9 48.0 1.0
O N:ALA49 4.9 30.6 1.0
CD2 a:TYR228 5.0 45.0 1.0

Chlorine binding site 3 out of 4 in 5d0s

Go back to Chlorine Binding Sites List in 5d0s
Chlorine binding site 3 out of 4 in the Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Cl301

b:37.9
occ:1.00
 NH1 U:ARG111 3.0 42.0 1.0
OH V:TYR69 3.0 41.6 1.0
ND2 U:ASN114 3.2 42.0 1.0
CB U:ASN114 3.7 39.3 1.0
CD U:ARG111 3.7 38.6 1.0
CE2 V:TYR69 3.8 42.8 1.0
CZ V:TYR69 3.8 42.7 1.0
CG U:ASN114 3.9 40.7 1.0
CZ U:ARG111 4.0 41.3 1.0
NE U:ARG111 4.3 40.2 1.0
CA U:ARG111 4.8 37.4 1.0
O U:ARG111 4.8 37.6 1.0

Chlorine binding site 4 out of 4 in 5d0s

Go back to Chlorine Binding Sites List in 5d0s
Chlorine binding site 4 out of 4 in the Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Yeast 20S Proteasome BETA5-D166N Mutant in Complex with Carfilzomib within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Cl202

b:60.4
occ:1.00
 NE2 b:GLN53 3.0 33.2 1.0
NH2 b:ARG45 3.2 31.8 1.0
NH1 b:ARG45 3.4 32.5 1.0
CG2 b:THR31 3.7 39.1 1.0
CZ b:ARG45 3.7 31.6 1.0
CB b:ALA49 4.1 31.7 1.0
CD b:GLN53 4.1 32.5 1.0
C46 b:3BV201 4.2 31.6 1.0
C45 b:3BV201 4.2 30.6 1.0
OD1 V:ASP120 4.3 62.6 1.0
CG b:GLN53 4.5 31.6 1.0
O V:THR119 4.5 39.4 1.0
CA b:ALA49 4.7 32.3 1.0
C44 b:3BV201 4.7 31.1 1.0
O M:HOH329 4.7 49.0 1.0
CB M:TYR228 4.8 58.8 1.0
O b:ALA49 4.8 33.9 1.0
OG1 b:THR20 4.9 33.2 1.0
O b:ASP32 4.9 39.6 1.0

Reference:

E.M.Huber, W.Heinemeyer, X.Li, C.S.Arendt, M.Hochstrasser, M.Groll. A Unified Mechanism For Proteolysis and Autocatalytic Activation in the 20S Proteasome. Nat Commun V. 7 10900 2016.
ISSN: ESSN 2041-1723
PubMed: 26964885
DOI: 10.1038/NCOMMS10900
Page generated: Sat Jul 12 01:04:11 2025

Last articles

K in 9DIT
K in 9DJV
K in 9DIG
K in 9DID
K in 9DIC
K in 9DI8
K in 9DIB
K in 9DE5
K in 9D5W
K in 9D19
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy