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Chlorine in PDB 5d3i: Crystal Structure of the SSL3-TLR2 Complex

Protein crystallography data

The structure of Crystal Structure of the SSL3-TLR2 Complex, PDB code: 5d3i was solved by L.J.Feitsma, E.G.Huizinga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.10 / 3.20
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 104.198, 104.198, 153.625, 90.00, 90.00, 120.00
R / Rfree (%) 23.1 / 27.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the SSL3-TLR2 Complex (pdb code 5d3i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the SSL3-TLR2 Complex, PDB code: 5d3i:

Chlorine binding site 1 out of 1 in 5d3i

Go back to Chlorine Binding Sites List in 5d3i
Chlorine binding site 1 out of 1 in the Crystal Structure of the SSL3-TLR2 Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the SSL3-TLR2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl805

b:46.7
occ:1.00
C7 A:PCW804 3.5 90.9 1.0
O B:MET159 3.8 54.0 1.0
C8 A:PCW804 4.0 94.4 1.0
C6 A:PCW804 4.1 91.8 1.0
OH A:TYR376 4.1 58.9 1.0
N A:PCW804 4.1 94.6 1.0
CE1 A:PHE349 4.8 44.1 1.0
CD1 A:PHE349 4.8 43.3 1.0
CZ A:TYR376 4.8 55.0 1.0
CZ A:PHE349 4.8 45.1 1.0
CG A:PHE349 4.9 43.5 1.0
CE2 A:PHE349 4.9 45.4 1.0
C B:MET159 4.9 54.9 1.0
CD2 A:PHE349 4.9 46.6 1.0

Reference:

K.J.Koymans, L.J.Feitsma, T.H.Brondijk, P.C.Aerts, E.Lukkien, P.Lossl, K.P.Van Kessel, C.J.De Haas, J.A.Van Strijp, E.G.Huizinga. Structural Basis For Inhibition of TLR2 By Staphylococcal Superantigen-Like Protein 3 (SSL3). Proc.Natl.Acad.Sci.Usa V. 112 11018 2015.
ISSN: ESSN 1091-6490
PubMed: 26283364
DOI: 10.1073/PNAS.1502026112
Page generated: Sat Jul 12 01:06:07 2025

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