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Chlorine in PDB 5d6t: Crystal Structure of Aspergillus Clavatus SPH3 in Complex with Galnac

Protein crystallography data

The structure of Crystal Structure of Aspergillus Clavatus SPH3 in Complex with Galnac, PDB code: 5d6t was solved by N.C.Bamford, D.J.Little, P.L.Howell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.39 / 1.93
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.740, 58.880, 96.790, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Aspergillus Clavatus SPH3 in Complex with Galnac (pdb code 5d6t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Aspergillus Clavatus SPH3 in Complex with Galnac, PDB code: 5d6t:

Chlorine binding site 1 out of 1 in 5d6t

Go back to Chlorine Binding Sites List in 5d6t
Chlorine binding site 1 out of 1 in the Crystal Structure of Aspergillus Clavatus SPH3 in Complex with Galnac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Aspergillus Clavatus SPH3 in Complex with Galnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:45.1
occ:1.00
N A:GLU284 3.4 24.4 1.0
N A:THR285 3.8 24.9 1.0
O A:HOH585 4.0 26.8 1.0
CA A:LEU283 4.1 22.5 1.0
CD2 A:LEU283 4.1 23.9 1.0
CA A:GLU284 4.2 25.4 1.0
CB A:GLU284 4.2 28.4 1.0
C A:LEU283 4.2 22.5 1.0
CB A:LEU283 4.4 21.8 1.0
C A:GLU284 4.5 25.1 1.0
O A:THR285 4.5 22.9 1.0
OG1 A:THR285 4.5 29.5 1.0
CB A:THR285 4.6 27.8 1.0
CA A:THR285 4.7 25.3 1.0
CG A:GLU284 4.9 29.7 1.0
O A:HIS282 4.9 24.1 1.0
CG A:LEU283 4.9 21.9 1.0

Reference:

N.C.Bamford, B.D.Snarr, F.N.Gravelat, D.J.Little, M.J.Lee, C.A.Zacharias, J.C.Chabot, A.M.Geller, S.D.Baptista, P.Baker, H.Robinson, P.L.Howell, D.C.Sheppard. SPH3 Is A Glycoside Hydrolase Required For the Biosynthesis of Galactosaminogalactan in Aspergillus Fumigatus. J.Biol.Chem. V. 290 27438 2015.
ISSN: ESSN 1083-351X
PubMed: 26342082
DOI: 10.1074/JBC.M115.679050
Page generated: Sat Jul 12 01:07:33 2025

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