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Chlorine in PDB 5dn4: Structure of the Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj

Protein crystallography data

The structure of Structure of the Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj, PDB code: 5dn4 was solved by P.Zaloba, B.A.Bailey-Elkin, B.L.Mark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.99 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.790, 43.630, 107.930, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.2

Other elements in 5dn4:

The structure of Structure of the Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj also contains other interesting chemical elements:

Iodine (I) 11 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj (pdb code 5dn4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj, PDB code: 5dn4:

Chlorine binding site 1 out of 1 in 5dn4

Go back to Chlorine Binding Sites List in 5dn4
Chlorine binding site 1 out of 1 in the Structure of the Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl412

b:44.1
occ:1.00
HD2 A:ARG39 2.8 60.3 1.0
HH11 A:ARG39 3.2 60.3 1.0
CD A:ARG39 3.6 50.3 1.0
HD3 A:ARG39 3.6 60.3 1.0
NH1 A:ARG39 3.7 50.3 1.0
HZ A:PHE85 3.9 43.8 1.0
O A:HOH647 4.1 50.9 1.0
HD11 A:ILE41 4.1 36.3 1.0
HH12 A:ARG39 4.2 60.3 1.0
NE A:ARG39 4.3 40.2 1.0
HE2 A:PHE85 4.3 35.7 1.0
CZ A:ARG39 4.3 44.8 1.0
CZ A:PHE85 4.6 36.5 1.0
HG3 A:ARG39 4.6 51.1 1.0
HA3 A:GLY54 4.7 30.8 1.0
CG A:ARG39 4.8 42.6 1.0
CE2 A:PHE85 4.8 29.8 1.0
HE A:ARG39 5.0 48.2 1.0

Reference:

P.Zaloba, B.A.Bailey-Elkin, M.Derksen, B.L.Mark. Structural and Biochemical Insights Into the Peptidoglycan Hydrolase Domain of Flgj From Salmonella Typhimurium. Plos One V. 11 49204 2016.
ISSN: ESSN 1932-6203
PubMed: 26871950
DOI: 10.1371/JOURNAL.PONE.0149204
Page generated: Sat Jul 12 01:19:14 2025

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