Chlorine in PDB 5dn5: Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj

The structure of Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj, PDB code: 5dn5 was solved by P.Zaloba, B.A.Bailey-Elkin, B.L.Mark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.76 / 2.15
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	105.700, 61.120, 65.220, 90.00, 106.70, 90.00
R / Rfree (%)	17.5 / 25.2

The structure of Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj also contains other interesting chemical elements:

Iodine	(I)	10 atoms
Sodium	(Na)	1 atom

The binding sites of Chlorine atom in the Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj (pdb code 5dn5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj, PDB code: 5dn5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl406 b:37.9 occ:1.00 O C:HOH547 3.2 34.5 1.0 HZ C:PHE236 3.6 30.7 1.0 HG21 C:THR221 3.9 31.5 1.0 CZ C:PHE236 4.5 25.6 1.0 HE1 C:PHE236 4.5 36.5 1.0 HG21 C:ILE219 4.7 36.4 1.0 CG2 C:THR221 4.8 26.2 1.0 HG23 C:THR221 4.8 31.5 1.0 CE1 C:PHE236 4.9 30.4 1.0

Chlorine binding site 2 out of 2 in the Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl407 b:44.3 occ:1.00 H C:ALA268 2.5 65.7 1.0 O C:HOH528 2.9 38.2 1.0 HB3 C:ALA268 3.2 56.4 1.0 N C:ALA268 3.3 54.8 1.0 HA C:THR267 3.4 74.3 1.0 HB1 C:ALA268 3.5 56.4 1.0 CB C:ALA268 3.8 47.0 1.0 HB2 C:HIS175 4.0 46.5 1.0 CA C:ALA268 4.1 55.4 1.0 CA C:THR267 4.1 61.9 1.0 C C:THR267 4.2 52.7 1.0 OE2 C:GLU269 4.2 43.8 1.0 HG22 C:THR267 4.3 66.3 1.0 HB C:THR267 4.3 64.3 1.0 HB3 C:PRO173 4.5 54.4 1.0 HA C:ALA268 4.6 66.5 1.0 CB C:THR267 4.6 53.6 1.0 HB2 C:ALA268 4.7 56.4 1.0 H C:GLU269 4.8 61.9 1.0 CB C:HIS175 4.9 38.7 1.0 CG2 C:THR267 4.9 55.3 1.0

P.Zaloba, B.A.Bailey-Elkin, M.Derksen, B.L.Mark. Structural and Biochemical Insights Into the Peptidoglycan Hydrolase Domain of Flgj From Salmonella Typhimurium. Plos One V. 11 49204 2016.
ISSN: ESSN 1932-6203
PubMed: 26871950
DOI: 10.1371/JOURNAL.PONE.0149204