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Chlorine in PDB 5dr8: Endothiapepsin in Complex with Fragment 330

Enzymatic activity of Endothiapepsin in Complex with Fragment 330

All present enzymatic activity of Endothiapepsin in Complex with Fragment 330:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 330, PDB code: 5dr8 was solved by A.Heine, A.Knoerlein, J.Schiebel, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.10 / 1.47
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.305, 73.176, 52.911, 90.00, 109.58, 90.00
R / Rfree (%) 12.3 / 15.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Endothiapepsin in Complex with Fragment 330 (pdb code 5dr8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Endothiapepsin in Complex with Fragment 330, PDB code: 5dr8:

Chlorine binding site 1 out of 1 in 5dr8

Go back to Chlorine Binding Sites List in 5dr8
Chlorine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 330


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Endothiapepsin in Complex with Fragment 330 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:31.6
occ:0.87
CL A:5G1401 0.0 31.6 0.9
C3 A:5G1401 1.7 31.5 0.9
HA3 A:GLY80 2.6 27.2 1.0
C2 A:5G1401 2.7 31.6 0.9
C4 A:5G1401 2.7 31.4 0.9
H A:GLY80 2.9 25.5 1.0
C6 A:5G1401 3.1 31.9 0.9
O A:HOH537 3.2 27.2 1.0
O A:HOH538 3.3 22.2 1.0
CA A:GLY80 3.4 22.7 1.0
N A:GLY80 3.4 21.3 1.0
N A:5G1401 3.5 28.3 0.9
O A:HOH540 3.6 31.3 1.0
O A:5G1401 3.7 33.1 0.9
OG1 A:THR222 3.8 7.6 1.0
HG1 A:THR222 3.9 9.2 1.0
O A:HOH509 3.9 22.5 1.0
C1 A:5G1401 4.0 30.6 0.9
H A:ASP81 4.0 29.3 1.0
C5 A:5G1401 4.0 32.1 0.9
HD13 A:ILE304 4.0 10.3 1.0
C A:GLY80 4.1 24.3 1.0
HA2 A:GLY80 4.1 27.2 1.0
N A:ASP81 4.3 24.4 1.0
HB3 A:TYR79 4.3 17.4 1.0
HD11 A:ILE304 4.3 10.3 1.0
N1 A:5G1401 4.4 24.9 0.9
C A:5G1401 4.5 31.8 0.9
OD2 A:ASP219 4.5 11.2 1.0
CD1 A:ILE304 4.6 8.6 1.0
C A:TYR79 4.7 19.2 1.0
HD12 A:ILE304 4.9 10.3 1.0
O A:GLY80 5.0 25.9 1.0
HB3 A:ASP81 5.0 29.9 1.0

Reference:

A.Heine, A.Knoerlein, J.Schiebel, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Fri Jul 26 06:51:26 2024

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