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Chlorine in PDB 5e1e: Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution

Enzymatic activity of Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution

All present enzymatic activity of Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution:
2.7.10.2;

Protein crystallography data

The structure of Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution, PDB code: 5e1e was solved by A.D.Ferguson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.73 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.095, 88.708, 174.928, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 26.8

Other elements in 5e1e:

The structure of Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution (pdb code 5e1e). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution, PDB code: 5e1e:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5e1e

Go back to Chlorine Binding Sites List in 5e1e
Chlorine binding site 1 out of 2 in the Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1202

b:28.8
occ:1.00
CL A:5JG1202 0.0 28.8 1.0
C18 A:5JG1202 1.7 31.5 1.0
C19 A:5JG1202 2.7 27.8 1.0
C17 A:5JG1202 2.7 31.6 1.0
N21 A:5JG1202 3.0 33.1 1.0
SD A:MET956 3.3 31.2 1.0
CE A:MET956 3.4 28.0 1.0
O A:HOH1391 3.5 30.5 1.0
CB A:ALA906 3.7 21.6 1.0
CB A:MET956 3.8 21.7 1.0
N20 A:5JG1202 4.0 27.9 1.0
C15 A:5JG1202 4.0 29.9 1.0
CD1 A:LEU1010 4.1 23.1 1.0
CG2 A:VAL938 4.1 27.9 1.0
O A:GLU957 4.1 26.5 1.0
CG A:MET956 4.2 26.1 1.0
C14 A:5JG1202 4.4 32.0 1.0
C22 A:5JG1202 4.4 32.1 1.0
CG1 A:VAL938 4.7 26.2 1.0
CG1 A:VAL889 4.8 32.1 1.0
C28 A:5JG1202 5.0 24.2 1.0
CB A:VAL938 5.0 27.7 1.0

Chlorine binding site 2 out of 2 in 5e1e

Go back to Chlorine Binding Sites List in 5e1e
Chlorine binding site 2 out of 2 in the Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human JAK1 Kinase in Complex with Compound 30 at 2.30 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1201

b:28.4
occ:1.00
CL B:5JG1201 0.0 28.4 1.0
C18 B:5JG1201 1.7 25.8 1.0
C19 B:5JG1201 2.7 22.9 1.0
C17 B:5JG1201 2.7 28.8 1.0
N21 B:5JG1201 3.0 33.6 1.0
SD B:MET956 3.4 34.9 1.0
O B:HOH1381 3.5 28.6 1.0
CE B:MET956 3.5 31.9 1.0
CB B:ALA906 3.7 27.2 1.0
CB B:MET956 3.9 26.8 1.0
O B:GLY1020 3.9 44.6 1.0
CD1 B:LEU1010 4.0 27.1 1.0
N20 B:5JG1201 4.0 24.9 1.0
C15 B:5JG1201 4.0 26.9 1.0
CG2 B:VAL938 4.0 26.4 1.0
O B:GLU957 4.1 27.2 1.0
CG B:MET956 4.3 30.3 1.0
C14 B:5JG1201 4.4 27.4 1.0
C22 B:5JG1201 4.5 30.9 1.0
CG1 B:VAL938 4.6 26.2 1.0
CG1 B:VAL889 4.8 30.2 1.0
CB B:VAL938 4.9 27.1 1.0

Reference:

M.M.Vasbinder, M.Alimzhanov, M.Augustin, G.Bebernitz, K.Bell, C.Chuaqui, T.Deegan, A.D.Ferguson, K.Goodwin, D.Huszar, A.Kawatkar, S.Kawatkar, J.Read, J.Shi, S.Steinbacher, H.Steuber, Q.Su, D.Toader, H.Wang, R.Woessner, A.Wu, M.Ye, M.Zinda. Identification of Azabenzimidazoles As Potent JAK1 Selective Inhibitors. Bioorg.Med.Chem.Lett. V. 26 60 2016.
ISSN: ESSN 1464-3405
PubMed: 26614408
DOI: 10.1016/J.BMCL.2015.11.031
Page generated: Fri Jul 26 07:03:01 2024

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