Atomistry » Chlorine » PDB 5eaf-5eic » 5ehd
Atomistry »
  Chlorine »
    PDB 5eaf-5eic »
      5ehd »

Chlorine in PDB 5ehd: Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C

Protein crystallography data

The structure of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C, PDB code: 5ehd was solved by N.Bernardo-Garcia, J.A.Hermoso, K.Gonzalez-Arzola, I.Diaz-Moreno, M.A.Dela Rosa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.53 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.799, 179.720, 104.300, 90.00, 94.32, 90.00
R / Rfree (%) 16.4 / 22.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C (pdb code 5ehd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C, PDB code: 5ehd:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5ehd

Go back to Chlorine Binding Sites List in 5ehd
Chlorine binding site 1 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:86.0
occ:1.00
O D:VAL83 3.9 41.3 1.0
O C:VAL83 4.0 40.8 1.0
O B:VAL83 4.0 43.7 1.0
O A:VAL83 4.0 47.4 1.0
O E:VAL83 4.1 49.9 1.0

Chlorine binding site 2 out of 4 in 5ehd

Go back to Chlorine Binding Sites List in 5ehd
Chlorine binding site 2 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl201

b:79.2
occ:1.00
O H:VAL83 3.7 46.2 1.0
O G:VAL83 3.8 38.3 1.0
O I:VAL83 3.9 38.7 1.0
O J:VAL83 4.1 38.3 1.0
O F:VAL83 4.2 34.7 1.0
C H:VAL83 4.8 38.8 1.0
C G:VAL83 4.9 33.4 1.0
C I:VAL83 4.9 33.8 1.0

Chlorine binding site 3 out of 4 in 5ehd

Go back to Chlorine Binding Sites List in 5ehd
Chlorine binding site 3 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Cl201

b:88.9
occ:1.00
O b:VAL83 3.9 41.3 1.0
O a:VAL83 4.0 44.9 1.0
O c:VAL83 4.0 42.2 1.0
O e:VAL83 4.1 36.1 1.0
O d:VAL83 4.2 47.9 1.0
C b:VAL83 4.9 40.0 1.0

Chlorine binding site 4 out of 4 in 5ehd

Go back to Chlorine Binding Sites List in 5ehd
Chlorine binding site 4 out of 4 in the Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Cl201

b:90.1
occ:1.00
O f:VAL83 3.3 38.5 1.0
O j:VAL83 3.6 34.9 1.0
O g:VAL83 4.0 35.4 1.0
O i:VAL83 4.3 39.6 1.0
C f:VAL83 4.4 32.3 1.0
O h:VAL83 4.6 35.8 1.0
C j:VAL83 4.7 28.9 1.0
CG1 j:VAL83 4.8 26.8 1.0
CG1 f:VAL83 4.9 33.1 1.0
CA f:VAL83 4.9 34.1 1.0

Reference:

N.Bernardo-Garcia, J.A.Hermoso, K.Gonzalez-Arzola, I.Diaz-Moreno, M.A.De La Rosa. Crystal Structure of Human Nucleophosmin-Core in Complex with Cytochrome C To Be Published.
Page generated: Sat Jul 12 01:41:53 2025

Last articles

Mg in 5MPS
Mg in 5MPQ
Mg in 5MPM
Mg in 5MPA
Mg in 5MP9
Mg in 5MOE
Mg in 5MP8
Mg in 5MH6
Mg in 5MOC
Mg in 5MN7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy