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Chlorine in PDB 5esr: Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus

Enzymatic activity of Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus

All present enzymatic activity of Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus:
3.8.1.5;

Protein crystallography data

The structure of Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus, PDB code: 5esr was solved by V.N.Malashkevich, R.Toro, E.C.Mundorff, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.38 / 1.48
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 79.377, 79.643, 94.766, 90.00, 90.00, 90.00
R / Rfree (%) 12.6 / 14.9

Other elements in 5esr:

The structure of Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus also contains other interesting chemical elements:

Cobalt (Co) 6 atoms
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus (pdb code 5esr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus, PDB code: 5esr:

Chlorine binding site 1 out of 1 in 5esr

Go back to Chlorine Binding Sites List in 5esr
Chlorine binding site 1 out of 1 in the Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Haloalkane Dehalogenase (Dcca) From Caulobacter Crescentus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl409

b:19.9
occ:1.00
 CO A:CO406 2.4 10.9 0.5
HE1 A:TRP163 2.5 13.8 1.0
HG2 A:GLU55 2.8 8.1 1.0
HA A:PRO212 2.8 8.6 1.0
HE1 A:TRP124 2.9 8.1 1.0
HE1 A:PHE160 2.9 12.5 1.0
HG3 A:PRO212 2.9 9.9 1.0
HD1 A:TRP124 3.3 8.8 1.0
NE1 A:TRP163 3.3 11.5 1.0
O A:HOH803 3.4 28.4 1.0
HB3 A:GLU55 3.4 8.2 1.0
NE1 A:TRP124 3.5 6.8 1.0
CA A:PRO212 3.6 7.1 1.0
CG A:GLU55 3.6 6.7 1.0
HB3 A:PRO212 3.6 8.5 1.0
HG21 A:VAL215 3.7 8.8 1.0
CG A:PRO212 3.7 8.3 1.0
CD1 A:TRP124 3.7 7.3 1.0
HB3 A:PHE211 3.8 7.8 1.0
CE1 A:PHE160 3.8 10.4 1.0
O A:HOH747 3.8 33.5 1.0
N A:PRO212 3.9 5.5 1.0
CB A:GLU55 3.9 6.8 1.0
CB A:PRO212 3.9 7.1 1.0
HG23 A:VAL215 4.0 8.8 1.0
HB2 A:GLU55 4.0 8.2 1.0
HG3 A:GLU55 4.1 8.1 1.0
HD1 A:TRP163 4.1 12.9 1.0
CD1 A:TRP163 4.2 10.8 1.0
HZ A:PHE160 4.2 11.3 1.0
CG2 A:VAL215 4.2 7.4 1.0
HD3 A:PRO212 4.2 8.2 1.0
CD A:PRO212 4.3 6.9 1.0
HZ2 A:TRP163 4.3 16.0 1.0
OD2 A:ASP123 4.4 8.4 1.0
C A:PHE211 4.4 6.7 1.0
CE2 A:TRP163 4.4 10.8 1.0
HG22 A:VAL215 4.5 8.8 1.0
CZ A:PHE160 4.5 9.4 1.0
OD1 A:ASP123 4.5 14.5 1.0
HG2 A:PRO212 4.5 9.9 1.0
O A:PHE211 4.5 6.4 1.0
CD A:GLU55 4.7 6.1 1.0
CZ2 A:TRP163 4.7 13.3 1.0
CB A:PHE211 4.8 6.5 1.0
CE2 A:TRP124 4.8 6.0 1.0
HD1 A:PHE160 4.8 11.9 1.0
CD1 A:PHE160 4.9 9.9 1.0
HB2 A:PRO212 4.9 8.5 1.0
C A:PRO212 4.9 7.4 1.0
CG A:ASP123 4.9 10.3 1.0

Reference:

L.Carlucci, E.Zhou, V.N.Malashkevich, S.C.Almo, E.C.Mundorff. Biochemical Characterization of Two Haloalkane Dehalogenases: Dcca From Caulobacter Crescentus and Dsaa From Saccharomonospora Azurea. Protein Sci. V. 25 877 2016.
ISSN: ESSN 1469-896X
PubMed: 26833751
DOI: 10.1002/PRO.2895
Page generated: Sat Jul 12 01:49:19 2025

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