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Chlorine in PDB 5fdj: Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel

Enzymatic activity of Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel

All present enzymatic activity of Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel, PDB code: 5fdj was solved by S.Tsujino, T.Tomizaki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.30 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.600, 78.600, 37.400, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22

Other elements in 5fdj:

The structure of Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel (pdb code 5fdj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel, PDB code: 5fdj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5fdj

Go back to Chlorine Binding Sites List in 5fdj
Chlorine binding site 1 out of 2 in the Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:82.0
occ:1.00
 CB A:ASN113 3.6 28.9 1.0
CD A:ARG114 3.7 36.5 1.0
CA A:ALA110 3.8 29.6 1.0
ND2 A:ASN113 3.8 30.7 1.0
CG A:ARG114 3.9 38.3 1.0
CB A:ALA110 4.2 34.9 1.0
CG A:ASN113 4.2 28.9 1.0
O A:VAL109 4.2 32.0 1.0
N A:ALA110 4.4 27.6 1.0
C A:VAL109 4.5 26.6 1.0
CG1 A:VAL109 4.6 45.2 1.0
O A:ALA110 4.7 35.9 1.0
C A:ALA110 4.7 33.0 1.0
CA A:ASN113 4.8 33.7 1.0
NE A:ARG114 5.0 34.7 1.0

Chlorine binding site 2 out of 2 in 5fdj

Go back to Chlorine Binding Sites List in 5fdj
Chlorine binding site 2 out of 2 in the Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg Lysozyme at Room Temperature Solved From Datasets Acquired By Ultrasonic Acoustic Levitation Method and Processed By Crystfel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:52.1
occ:1.00
 O A:HOH322 3.0 32.9 1.0
O A:THR69 3.1 35.5 1.0
N A:THR69 3.1 34.4 1.0
C A:THR69 3.6 36.4 1.0
N A:ARG68 3.6 34.6 1.0
OG A:SER72 3.6 38.7 1.0
OD1 A:ASN65 3.6 45.6 1.0
C A:GLY67 3.7 36.8 1.0
CA A:GLY67 3.7 33.5 1.0
N A:GLY67 3.8 31.9 1.0
CA A:THR69 3.8 31.8 1.0
O A:HOH338 4.0 36.9 1.0
C A:ARG68 4.2 38.9 1.0
CB A:THR69 4.2 34.3 1.0
OD1 A:ASP66 4.3 28.6 1.0
CA A:ARG68 4.3 37.6 1.0
O A:GLY67 4.4 38.3 1.0
N A:PRO70 4.4 42.4 1.0
NA A:NA204 4.7 41.0 1.0
CA A:PRO70 4.7 42.7 1.0
CB A:SER72 4.8 40.3 1.0
CG A:ASN65 4.8 46.2 1.0
O A:HOH321 4.8 75.3 0.5
OG1 A:THR69 4.8 31.2 1.0
N A:ASP66 4.9 32.6 1.0
C A:ASP66 4.9 32.1 1.0

Reference:

S.Tsujino, T.Tomizaki. Ultrasonic Acoustic Levitation For Fast Frame Rate X-Ray Protein Crystallography at Room Temperature. Sci Rep V. 6 25558 2016.
ISSN: ESSN 2045-2322
PubMed: 27150272
DOI: 10.1038/SREP25558
Page generated: Sat Jul 12 02:02:05 2025

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