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Chlorine in PDB 5fze: Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960, PDB code: 5fze was solved by R.Nowak, T.Krojer, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, D.Rotili, A.Mai, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.90 / 2.02
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 141.790, 141.790, 150.890, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 21.7

Other elements in 5fze:

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960 also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960 (pdb code 5fze). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960, PDB code: 5fze:

Chlorine binding site 1 out of 1 in 5fze

Go back to Chlorine Binding Sites List in 5fze
Chlorine binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1760

b:62.4
occ:1.00
ND2 A:ASN91 2.3 36.9 1.0
O A:LEU413 2.8 43.7 1.0
O A:GLU419 2.8 68.0 1.0
O A:THR416 2.9 63.6 1.0
O A:LEU90 3.1 38.7 1.0
O A:HOH2051 3.2 56.2 1.0
CG A:ASN91 3.6 41.7 1.0
O A:VAL414 3.8 43.6 1.0
C A:GLU419 3.9 56.0 1.0
C A:LEU413 3.9 40.2 1.0
C A:THR416 4.0 61.8 1.0
C A:VAL414 4.0 44.3 1.0
CA A:VAL414 4.0 35.9 1.0
C A:LEU90 4.1 39.6 1.0
CA A:ASN91 4.1 44.9 1.0
CB A:ASN91 4.2 42.2 1.0
CB A:GLU419 4.3 58.7 1.0
N A:THR416 4.5 54.7 1.0
N A:VAL414 4.5 37.0 1.0
N A:ASN91 4.5 39.0 1.0
CA A:GLU419 4.5 58.3 1.0
OD1 A:ASN91 4.6 54.3 1.0
CA A:THR416 4.7 62.1 1.0
N A:SER415 4.8 39.3 1.0
N A:GLU419 4.8 65.0 1.0
N A:ASP420 4.8 52.5 1.0
N A:ILE417 4.9 65.1 1.0
CA A:ASP420 4.9 62.8 1.0
O A:ILE417 5.0 63.2 1.0

Reference:

R.Nowak, T.Krojer, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, D.Rotili, A.Mai, U.Oppermann. Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960 To Be Published.
Page generated: Sat Jul 12 02:22:02 2025

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