Atomistry » Chlorine » PDB 5grn-5h4z » 5gwb
Atomistry »
  Chlorine »
    PDB 5grn-5h4z »
      5gwb »

Chlorine in PDB 5gwb: Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection

Enzymatic activity of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection

All present enzymatic activity of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection, PDB code: 5gwb was solved by M.V.Hosur, R.M.Kini, C.Yeow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.15 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.360, 77.360, 36.690, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 23.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection (pdb code 5gwb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection, PDB code: 5gwb:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 1 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:33.1
occ:1.00
 N A:ASN74 3.0 17.1 1.0
NE A:ARG73 3.0 34.3 1.0
O A:HOH304 3.1 29.8 1.0
NH2 A:ARG73 3.3 31.3 1.0
O A:HOH310 3.5 39.4 1.0
O A:ASN74 3.5 22.1 1.0
C A:ASN74 3.5 23.3 1.0
CZ A:ARG73 3.6 30.2 1.0
CA A:ASN74 3.8 21.4 1.0
CB A:ARG73 3.8 26.3 1.0
CA A:ARG73 3.9 22.6 1.0
C A:ARG73 3.9 23.6 1.0
CD2 A:LEU75 4.0 24.9 1.0
N A:LEU75 4.1 22.9 1.0
CD A:ARG73 4.1 23.0 1.0
CB A:ASN74 4.2 19.4 1.0
CA A:LEU75 4.5 19.2 1.0
CG A:ARG73 4.5 24.1 1.0
O A:HOH417 4.6 26.4 1.0
CG A:LEU75 4.8 16.8 1.0
NH1 A:ARG73 4.9 28.4 1.0
OD1 A:ASN77 4.9 27.8 1.0

Chlorine binding site 2 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 2 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:39.7
occ:1.00
 O A:HOH313 3.7 32.4 1.0
NZ A:LYS33 4.0 30.8 1.0
CZ3 A:TRP123 4.0 18.7 1.0
CE2 A:PHE38 4.0 18.4 1.0
CD A:ARG5 4.3 22.5 1.0
CE A:LYS33 4.5 25.1 1.0
CB A:ARG5 4.5 22.2 1.0
CD A:LYS33 4.5 19.3 1.0
CZ A:PHE38 4.6 14.9 1.0
CE3 A:TRP123 4.8 18.6 1.0
NE A:ARG5 4.8 25.0 1.0
O A:HOH404 4.8 28.4 1.0
CG A:ARG5 4.9 22.5 1.0
CH2 A:TRP123 4.9 24.0 1.0

Chlorine binding site 3 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 3 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:

Chlorine binding site 4 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 4 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:31.4
occ:1.00
 ND2 A:ASN59 3.0 30.8 1.0
NE1 A:TRP63 3.2 20.4 1.0
CD1 A:TRP62 3.9 22.7 1.0
CD1 A:TRP63 4.0 19.0 1.0
N2 A:GAI207 4.1 22.9 1.0
CG A:ASN59 4.1 25.6 1.0
N3 A:GAI207 4.1 18.4 1.0
CE2 A:TRP63 4.2 18.4 1.0
C A:GAI207 4.3 22.2 1.0
OD1 A:ASN59 4.4 21.0 1.0
CZ2 A:TRP63 4.6 20.4 1.0
NE1 A:TRP62 4.6 26.4 1.0
CG A:TRP62 4.7 20.1 1.0
O A:ALA107 4.8 14.7 1.0
CB A:TRP62 4.9 17.8 1.0
CB A:ALA107 4.9 16.8 1.0

Chlorine binding site 5 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 5 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:22.7
occ:1.00
 ND2 A:ASN113 3.1 18.0 1.0
CB A:ASN113 3.6 15.5 1.0
O A:HOH369 3.6 20.1 1.0
CG A:ASN113 3.9 17.4 1.0
O A:VAL109 4.0 17.8 1.0
CA A:ALA110 4.1 13.3 1.0
CG1 A:VAL109 4.1 22.3 1.0
C A:VAL109 4.3 14.2 1.0
N A:ALA110 4.4 12.9 1.0
CD A:ARG114 4.5 19.1 1.0
CG A:ARG114 4.5 17.3 1.0
CB A:ALA110 4.7 15.8 1.0
CB A:VAL109 5.0 21.5 1.0
CA A:ASN113 5.0 13.8 1.0

Reference:

M.V.Hosur, R.M.Kini, C.Yeow. Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection To Be Published.
Page generated: Fri Jul 26 08:37:07 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy