Atomistry » Chlorine » PDB 5hqa-5i1f » 5i1f
Atomistry »
  Chlorine »
    PDB 5hqa-5i1f »
      5i1f »

Chlorine in PDB 5i1f: Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose

Enzymatic activity of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose

All present enzymatic activity of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose:
2.7.7.9;

Protein crystallography data

The structure of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose, PDB code: 5i1f was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.15
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.900, 84.900, 252.700, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 20.3

Other elements in 5i1f:

The structure of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose (pdb code 5i1f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose, PDB code: 5i1f:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 1 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:50.1
occ:0.71
 N A:ALA166 3.4 61.6 1.0
CB A:ALA166 3.5 68.3 1.0
CD A:PRO165 3.6 53.6 1.0
CB A:ALA164 3.6 53.6 1.0
N A:PRO165 3.8 51.9 1.0
CA A:ALA166 4.0 64.8 1.0
C A:ALA164 4.2 50.1 1.0
C A:PRO165 4.3 58.6 1.0
CA A:ALA164 4.4 51.3 1.0
CA A:PRO165 4.4 53.9 1.0
CG A:PRO165 4.5 53.6 1.0
CB A:PRO165 4.5 56.1 1.0
O A:ALA164 4.8 48.2 1.0

Chlorine binding site 2 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 2 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:54.3
occ:0.82
 O A:HOH575 2.9 47.9 1.0
CD A:PRO126 3.7 39.6 1.0
CG A:LYS211 3.8 45.6 1.0
CG A:PRO126 3.8 45.1 1.0
CZ A:PHE150 3.9 44.7 1.0
CB A:PRO126 3.9 32.2 1.0
CD A:PRO212 4.1 33.1 1.0
CD1 A:LEU2 4.1 78.7 1.0
CE A:LYS211 4.3 52.1 1.0
N A:PRO126 4.3 42.7 1.0
CE1 A:PHE150 4.4 44.9 1.0
CB A:LYS211 4.5 36.0 1.0
CD A:LYS211 4.6 51.0 1.0
CA A:PRO126 4.6 39.0 1.0
CB A:LEU2 4.7 78.0 1.0
CA A:LYS211 4.8 33.1 1.0
CE2 A:PHE150 4.9 40.1 1.0
CG A:PRO212 5.0 35.0 1.0
CG A:LEU2 5.0 81.4 1.0

Chlorine binding site 3 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 3 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:41.9
occ:0.60
 O A:HOH575 2.7 47.9 1.0
O A:HOH401 2.8 54.8 1.0
O A:HOH561 3.0 59.9 1.0
N A:LYS213 3.3 39.3 1.0
CB A:LYS213 3.4 38.4 1.0
CD A:PRO212 3.5 33.1 1.0
CG A:PRO212 3.6 35.0 1.0
CB A:LYS211 3.7 36.0 1.0
N A:PRO212 3.8 31.6 1.0
CA A:LYS213 3.9 42.4 1.0
CE A:LYS211 4.2 52.1 1.0
C A:LYS211 4.2 33.0 1.0
C A:PRO212 4.2 39.1 1.0
CA A:PRO212 4.5 37.6 1.0
CG A:LYS211 4.5 45.6 1.0
CA A:LYS211 4.5 33.1 1.0
CG A:LYS213 4.6 49.5 1.0
CB A:PRO212 4.6 36.6 1.0
OE2 A:GLU242 4.7 56.5 1.0
OE1 A:GLU242 4.8 57.7 1.0
CD A:LYS211 4.8 51.0 1.0
O A:LYS211 4.8 31.0 1.0
CE A:LYS213 4.9 68.4 1.0

Chlorine binding site 4 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 4 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:38.5
occ:0.62
 O A:HOH547 3.0 47.7 1.0
N A:ASP255 3.1 38.9 1.0
CA A:PHE254 3.7 41.1 1.0
CA A:GLY261 3.8 38.9 1.0
C A:PHE254 3.9 44.2 1.0
O A:ARG253 4.1 45.7 1.0
CD A:LYS264 4.1 51.3 1.0
CA A:ASP255 4.1 44.7 1.0
CB A:ASP255 4.2 50.3 1.0
CD1 A:PHE254 4.3 42.2 1.0
CB A:PHE254 4.4 40.6 1.0
NZ A:LYS264 4.5 58.3 1.0
N A:PHE254 4.7 44.4 1.0
C A:ASP255 4.7 41.5 1.0
O A:ASP255 4.7 37.8 1.0
N A:GLY261 4.7 39.0 1.0
C A:ARG253 4.8 45.3 1.0
C A:GLY261 4.8 39.3 1.0
O A:HOH526 4.8 47.6 1.0
CG A:PHE254 4.8 45.2 1.0
O A:GLY261 4.9 41.3 1.0
CE A:LYS264 4.9 50.5 1.0

Chlorine binding site 5 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 5 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:34.8
occ:0.85
 O A:HOH488 3.0 40.2 1.0
NZ A:LYS27 3.3 26.3 1.0
O A:HOH469 3.4 38.6 1.0
CA A:GLY13 3.4 36.4 1.0
N A:GLY15 3.5 31.8 1.0
CE A:LYS27 3.6 33.3 1.0
C A:GLY13 3.7 34.9 1.0
N A:LEU14 3.8 36.7 1.0
CD A:LYS27 3.9 34.6 1.0
O A:HOH554 3.9 38.5 1.0
CA A:GLY15 4.0 30.9 1.0
C2C A:UPG301 4.0 28.9 1.0
O2C A:UPG301 4.1 29.8 1.0
O2A A:UPG301 4.2 27.2 1.0
N A:GLY13 4.3 32.6 1.0
CG A:LYS27 4.4 32.6 1.0
O A:HOH536 4.4 28.2 1.0
O A:GLY13 4.4 38.7 1.0
O A:HOH461 4.4 34.7 1.0
O A:HOH507 4.4 37.6 1.0
C A:LEU14 4.5 37.9 1.0
O A:HOH510 4.5 48.8 1.0
O5C A:UPG301 4.6 30.9 1.0
C6 A:UPG301 4.7 27.8 1.0
MG A:MG302 4.7 45.2 1.0
PA A:UPG301 4.7 29.3 1.0
O1A A:UPG301 4.7 22.1 1.0
CA A:LEU14 4.7 38.8 1.0
OE2 A:GLU28 4.8 30.9 1.0
O A:HOH424 4.8 36.7 1.0
C3C A:UPG301 4.9 31.7 1.0

Chlorine binding site 6 out of 6 in 5i1f

Go back to Chlorine Binding Sites List in 5i1f
Chlorine binding site 6 out of 6 in the Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate- Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:45.9
occ:0.86
 N A:LYS259 3.2 42.3 1.0
O A:HOH492 3.2 49.9 1.0
CD A:LYS259 3.4 61.1 1.0
CD A:ARG17 3.7 42.9 1.0
CA A:SER258 3.7 42.0 1.0
CB A:SER258 3.9 44.3 1.0
C A:SER258 3.9 41.0 1.0
CB A:LYS259 4.0 44.6 1.0
CG A:ARG17 4.0 39.1 1.0
CB A:ARG17 4.1 39.6 1.0
NE A:ARG17 4.2 47.4 1.0
CA A:LYS259 4.2 42.2 1.0
NZ A:LYS259 4.2 72.1 1.0
CE A:LYS259 4.2 60.4 1.0
CG A:LYS259 4.2 48.1 1.0
CZ A:ARG17 4.7 52.6 1.0
NH1 A:ARG17 4.9 42.2 1.0
N A:LEU260 4.9 41.9 1.0
O A:GLY257 4.9 36.9 1.0

Reference:

J.Abendroth, D.D.Lorimer, T.E.Edwards. Crystal Structure of Utp-Glucose-1-Phosphate Uridylyltransferase From Burkholderia Vietnamiensis in Complex with Uridine-5'-Diphosphate-Glucose To Be Published.
Page generated: Sat Jul 12 02:57:36 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy