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Chlorine in PDB 5j2d: Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
Enzymatic activity of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
All present enzymatic activity of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus, PDB code: 5j2d
was solved by
V.K.Batra,
S.H.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 50.00 / 2.10 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 50.740, 79.940, 55.480, 90.00, 107.63, 90.00 |
| R / Rfree (%) | 20.1 / 25.6 |
Other elements in 5j2d:
The structure of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Sodium | (Na) | 2 atoms |
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
(pdb code 5j2d). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus, PDB code: 5j2d:
Jump to Chlorine binding site number: 1; 2; 3; 4;
In total 4 binding sites of Chlorine where determined in the Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus, PDB code: 5j2d:
Jump to Chlorine binding site number: 1; 2; 3; 4;
Chlorine binding site 1 out of 4 in 5j2d
Go back to
Chlorine Binding Sites List in 5j2d
Chlorine binding site 1 out
of 4 in the Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus within 5.0Å range:
|
Chlorine binding site 2 out of 4 in 5j2d
Go back to
Chlorine Binding Sites List in 5j2d
Chlorine binding site 2 out
of 4 in the Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus within 5.0Å range:
|
Chlorine binding site 3 out of 4 in 5j2d
Go back to
Chlorine Binding Sites List in 5j2d
Chlorine binding site 3 out
of 4 in the Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus within 5.0Å range:
|
Chlorine binding site 4 out of 4 in 5j2d
Go back to
Chlorine Binding Sites List in 5j2d
Chlorine binding site 4 out
of 4 in the Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus within 5.0Å range:
|
Reference:
V.K.Batra,
W.A.Beard,
L.C.Pedersen,
S.H.Wilson.
Structures of Dna Polymerase Mispaired Dna Termini Transitioning to Pre-Catalytic Complexes Support An Induced-Fit Fidelity Mechanism. Structure V. 24 1863 2016.
ISSN: ISSN 0969-2126
PubMed: 27642161
DOI: 10.1016/J.STR.2016.08.006
Page generated: Sat Jul 12 03:21:58 2025
ISSN: ISSN 0969-2126
PubMed: 27642161
DOI: 10.1016/J.STR.2016.08.006
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