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Chlorine in PDB 5jd5: Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy

Protein crystallography data

The structure of Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy, PDB code: 5jd5 was solved by P.J.Stogios, X.Xu, H.Cui, M.Martinez-Martinez, T.N.Chernikova, P.N.Golyshin, M.M.Yakimov, M.Ferrer, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.72 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 91.668, 97.160, 167.670, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy (pdb code 5jd5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy, PDB code: 5jd5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5jd5

Go back to Chlorine Binding Sites List in 5jd5
Chlorine binding site 1 out of 2 in the Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:35.1
occ:1.00
N A:ALA15 3.4 30.1 1.0
CB A:ASP14 3.7 36.5 1.0
N A:ASP14 3.7 32.9 1.0
CB A:ALA15 3.9 30.6 1.0
CA A:ASP14 4.0 33.2 1.0
O A:HOH725 4.1 35.2 1.0
C A:ASP14 4.1 30.9 1.0
CA A:ALA15 4.1 29.2 1.0
CB A:LYS13 4.3 33.2 1.0
C A:LYS13 4.5 31.3 1.0
CG A:ASP14 4.7 38.6 1.0
O A:HOH806 4.9 40.4 1.0
CA A:LYS13 4.9 31.7 1.0

Chlorine binding site 2 out of 2 in 5jd5

Go back to Chlorine Binding Sites List in 5jd5
Chlorine binding site 2 out of 2 in the Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mgs-MILE3, An Alpha/Beta Hydrolase Enzyme From the Metagenome of Pyrene-Phenanthrene Enrichment Culture with Sediment Sample of Milazzo Harbor, Italy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:42.4
occ:1.00
NH2 D:ARG210 3.0 22.4 1.0
NH1 B:ARG204 3.0 23.3 1.0
CD B:ARG204 3.5 21.5 1.0
O D:HOH450 3.5 29.0 1.0
CZ D:ARG210 4.0 23.8 1.0
CZ B:ARG204 4.1 21.2 1.0
NH1 D:ARG210 4.1 19.0 1.0
NE B:ARG204 4.2 20.8 1.0
CB D:ARG204 4.5 21.9 1.0
CB B:ALA240 4.5 25.1 1.0
CD D:ARG204 4.6 24.6 1.0
O D:HOH605 4.6 20.0 1.0
O D:HOH806 4.7 55.5 1.0
CG B:ARG204 4.7 22.4 1.0
O D:HOH782 4.8 50.4 1.0
CG D:ARG204 4.9 23.1 1.0

Reference:

M.Martinez-Martinez, P.J.Stogios, X.Xu, H.Cui, M.Martinez-Martinez, T.N.Chernikova, P.N.Golyshin, M.M.Yakimov, M.Ferrer, A.Savchenko. N/A N/A.
Page generated: Sat Jul 12 03:34:07 2025

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