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Chlorine in PDB 5jn0: Crk-II SH2 Domain

Protein crystallography data

The structure of Crk-II SH2 Domain, PDB code: 5jn0 was solved by J.-H.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.82 / 1.68
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 86.082, 86.082, 33.847, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 21

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crk-II SH2 Domain (pdb code 5jn0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crk-II SH2 Domain, PDB code: 5jn0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5jn0

Go back to Chlorine Binding Sites List in 5jn0
Chlorine binding site 1 out of 2 in the Crk-II SH2 Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crk-II SH2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:39.8
occ:1.00
ND1 A:HIS32 2.9 18.5 0.5
N A:HIS32 3.1 12.4 0.5
N A:HIS32 3.1 12.4 0.5
CA A:ARG31 3.6 15.2 1.0
CG A:HIS32 3.6 10.6 0.5
CD2 A:HIS32 3.7 12.0 0.5
CG A:HIS32 3.8 12.5 0.5
C A:ARG31 3.8 13.8 1.0
O A:HOH387 3.8 34.3 1.0
CE1 A:HIS32 3.9 16.5 0.5
CB A:HIS32 3.9 11.7 0.5
CB A:HIS32 3.9 11.5 0.5
CB A:ARG31 4.0 16.7 1.0
CA A:HIS32 4.1 9.9 0.5
CA A:HIS32 4.1 9.8 0.5
ND1 A:HIS32 4.1 13.4 0.5
NE2 A:HIS32 4.3 15.2 0.5
O A:HOH428 4.3 41.1 1.0
CG A:ARG31 4.3 25.3 1.0
CE1 A:HIS32 4.5 12.7 0.5
O A:HOH373 4.6 30.1 1.0
N A:ARG31 4.9 12.1 1.0
O A:GLN30 4.9 14.3 1.0
CD2 A:HIS32 4.9 12.6 0.5
NE2 A:HIS32 4.9 21.6 0.5

Chlorine binding site 2 out of 2 in 5jn0

Go back to Chlorine Binding Sites List in 5jn0
Chlorine binding site 2 out of 2 in the Crk-II SH2 Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crk-II SH2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:33.0
occ:1.00
O A:HOH435 2.0 32.7 1.0
N A:ALA102 2.8 13.1 1.0
OE1 A:GLN30 2.8 15.5 1.0
O A:HOH450 2.9 38.2 1.0
CB A:ALA102 3.4 17.5 1.0
CA A:VAL101 3.6 7.9 1.0
CA A:ALA102 3.6 16.0 1.0
CD A:GLN30 3.7 14.9 1.0
C A:VAL101 3.7 12.9 1.0
CG2 A:VAL101 3.7 12.6 1.0
NE2 A:GLN30 4.1 18.9 1.0
CG1 A:VAL34 4.1 7.7 1.0
CB A:VAL101 4.2 10.8 1.0
O A:PRO100 4.4 9.9 1.0
O A:HOH347 4.5 14.3 1.0
C A:ALA102 4.7 19.2 1.0
O A:ALA102 4.8 16.5 1.0
N A:VAL101 4.8 7.2 1.0
CG A:GLN30 4.8 11.7 1.0
O A:VAL101 4.9 10.9 1.0
CG2 A:VAL34 4.9 10.3 1.0
O A:HOH415 4.9 27.1 1.0

Reference:

J.-H.Cho, J.-H.Cho. N/A N/A.
Page generated: Sat Jul 12 03:41:59 2025

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