Atomistry » Chlorine » PDB 5kq0-5kvy » 5krr
Atomistry »
  Chlorine »
    PDB 5kq0-5kvy »
      5krr »

Chlorine in PDB 5krr: 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+)

Enzymatic activity of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+)

All present enzymatic activity of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+):
1.1.1.267;

Protein crystallography data

The structure of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+), PDB code: 5krr was solved by N.Ussin, R.W.Abdulsalam, L.R.Offermann, M.Perdue, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 64.840, 149.084, 242.512, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23

Other elements in 5krr:

The structure of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+) also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+) (pdb code 5krr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+), PDB code: 5krr:

Chlorine binding site 1 out of 1 in 5krr

Go back to Chlorine Binding Sites List in 5krr
Chlorine binding site 1 out of 1 in the 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex with Mn(2+) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:57.6
occ:1.00
 N A:ASP172 3.5 43.4 1.0
CB A:CYS171 4.0 44.4 1.0
CG A:GLN176 4.0 38.7 1.0
CA A:VAL164 4.0 34.8 1.0
CA A:CYS171 4.0 45.5 1.0
O A:THR163 4.1 40.5 1.0
N A:VAL164 4.2 36.4 1.0
CG2 A:VAL164 4.2 34.2 1.0
C A:THR163 4.2 38.9 1.0
O A:ASP172 4.3 39.3 1.0
CB A:ASN167 4.3 46.4 1.0
C A:CYS171 4.3 44.7 1.0
CA A:ASP172 4.4 43.3 1.0
CD A:GLN176 4.5 40.8 1.0
C A:ASP172 4.5 39.8 1.0
CB A:ASP172 4.6 46.2 1.0
NE2 A:GLN176 4.6 43.4 1.0
CB A:VAL164 4.7 33.2 1.0
CG A:ASN167 4.8 51.1 1.0
CB A:THR163 5.0 42.5 1.0

Reference:

N.K.Ussin, A.M.Bagnell, L.R.Offermann, R.Abdulsalam, M.L.Perdue, P.Magee, M.Chruszcz. Structural Characterization of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus. Biochim Biophys Acta V.1866 1209 2018PROTEINS Proteom.
ISSN: ISSN 1878-1454
PubMed: 30278288
DOI: 10.1016/J.BBAPAP.2018.09.008
Page generated: Sat Jul 12 04:10:35 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy