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Chlorine in PDB 5kt8: Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid

Enzymatic activity of Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid

All present enzymatic activity of Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid:
1.11.1.21;

Protein crystallography data

The structure of Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid, PDB code: 5kt8 was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.36 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 100.651, 112.782, 174.539, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 18.6

Other elements in 5kt8:

The structure of Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid (pdb code 5kt8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid, PDB code: 5kt8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5kt8

Go back to Chlorine Binding Sites List in 5kt8
Chlorine binding site 1 out of 2 in the Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl803

b:43.0
occ:1.00
 O A:HOH1373 2.9 28.7 1.0
O A:HOH1402 3.2 24.4 1.0
O A:HOH1465 3.2 27.7 1.0
N A:GLY124 3.3 23.8 1.0
O A:HOH1414 3.4 49.2 1.0
CG2 A:VAL200 3.4 39.5 1.0
CG A:GLU198 3.6 56.1 1.0
CB A:GLU198 3.7 50.3 1.0
CA A:GLY124 4.0 23.6 1.0
CB A:ARG123 4.2 23.7 1.0
C A:ARG123 4.3 24.2 1.0
CA A:ARG123 4.3 22.6 1.0
CD A:GLU198 4.4 54.1 1.0
OE1 A:GLU128 4.5 32.2 1.0
NA A:NA802 4.6 25.4 1.0
OE1 A:GLU198 4.7 44.5 1.0
CG A:ARG123 4.7 23.9 1.0
C A:GLY124 4.7 23.9 1.0
O A:GLY124 4.7 21.9 1.0
OE2 A:GLU128 4.8 35.6 1.0
CD A:GLU128 4.8 31.6 1.0
CG A:GLN130 4.9 27.5 1.0
CB A:VAL200 4.9 41.0 1.0
O A:HOH1282 4.9 27.6 1.0

Chlorine binding site 2 out of 2 in 5kt8

Go back to Chlorine Binding Sites List in 5kt8
Chlorine binding site 2 out of 2 in the Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the W139F Variant of the Catalase-Peroxidase From B. Pseudomallei Treated with Isoniazid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl803

b:36.5
occ:1.00
 O B:HOH1341 3.1 25.4 1.0
O B:HOH1449 3.1 20.3 1.0
N B:GLY124 3.2 21.1 1.0
O B:HOH1407 3.2 27.2 1.0
N3 B:NIZ809 3.4 52.8 1.0
CG2 B:VAL200 3.5 36.1 1.0
CG B:GLU198 3.6 40.4 1.0
CB B:GLU198 3.7 36.5 1.0
N2 B:NIZ809 3.7 58.8 1.0
CA B:GLY124 3.9 21.6 1.0
CB B:ARG123 4.2 20.7 1.0
C B:ARG123 4.2 21.2 1.0
CA B:ARG123 4.3 20.0 1.0
CD B:GLU198 4.4 43.5 1.0
OE1 B:GLU128 4.4 29.0 1.0
O B:GLY124 4.6 24.7 1.0
C B:GLY124 4.6 22.1 1.0
OE1 B:GLU198 4.6 41.4 1.0
NA B:NA802 4.6 24.6 1.0
CG B:ARG123 4.7 20.9 1.0
OE2 B:GLU128 4.7 36.4 1.0
CD B:GLU128 4.8 28.2 1.0
O B:HOH1222 4.8 25.8 1.0
CG B:GLN130 4.8 24.2 1.0
CB B:VAL200 4.9 31.8 1.0
C B:NIZ809 5.0 57.3 1.0

Reference:

P.C.Loewen, P.C.Loewen. N/A N/A.
Page generated: Fri Jul 26 10:52:53 2024

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