Chlorine in PDB 5ldb: Crystal Structure of Polyphosphate Kinase From Meiothermus Ruber Bound to Adp

The structure of Crystal Structure of Polyphosphate Kinase From Meiothermus Ruber Bound to Adp, PDB code: 5ldb was solved by S.Gerhardt, O.Einsle, F.Kemper, N.Schwarzer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.75 / 2.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	165.619, 165.619, 95.150, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 21

The structure of Crystal Structure of Polyphosphate Kinase From Meiothermus Ruber Bound to Adp also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Chlorine atom in the Crystal Structure of Polyphosphate Kinase From Meiothermus Ruber Bound to Adp (pdb code 5ldb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Polyphosphate Kinase From Meiothermus Ruber Bound to Adp, PDB code: 5ldb:

Chlorine binding site 1 out of 1 in the Crystal Structure of Polyphosphate Kinase From Meiothermus Ruber Bound to Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Polyphosphate Kinase From Meiothermus Ruber Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1004 b:63.2 occ:1.00 CE B:LYS29 3.5 53.0 1.0 NZ B:LYS29 3.6 67.0 1.0 CD1 B:TRP233 3.7 35.9 1.0 N B:TRP233 3.8 30.7 1.0 CB B:ASN232 3.8 31.5 1.0 N B:ASN232 3.9 31.2 1.0 O B:HOH1222 4.1 44.7 1.0 CA B:ASN232 4.2 29.6 1.0 CD B:LYS29 4.3 41.4 1.0 CB B:TRP233 4.4 32.0 1.0 CG B:TRP233 4.4 32.9 1.0 C B:ASN232 4.4 33.2 1.0 CG B:ASN232 4.6 58.7 1.0 CA B:TRP233 4.7 31.5 1.0 NE1 B:TRP233 4.7 35.9 1.0 C B:LYS231 4.8 36.0 1.0 CG B:LYS29 4.8 31.4 1.0 ND2 B:ASN232 4.9 59.0 1.0

A.E.Parnell, S.Mordhorst, F.Kemper, M.Giurrandino, J.P.Prince, N.J.Schwarzer, A.Hofer, D.Wohlwend, H.J.Jessen, S.Gerhardt, O.Einsle, P.C.F.Oyston, J.N.Andexer, P.L.Roach. Substrate Recognition and Mechanism Revealed By Ligand-Bound Polyphosphate Kinase 2 Structures. Proc. Natl. Acad. Sci. V. 115 3350 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29531036
DOI: 10.1073/PNAS.1710741115