Atomistry » Chlorine » PDB 5l7i-5lf1 » 5ldz
Atomistry »
  Chlorine »
    PDB 5l7i-5lf1 »
      5ldz »

Chlorine in PDB 5ldz: Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase

Enzymatic activity of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase

All present enzymatic activity of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase:
3.1.3.11;

Protein crystallography data

The structure of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase, PDB code: 5ldz was solved by A.Ruf, T.Tetaz, B.Schott, C.Joseph, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.80 / 2.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 121.519, 121.519, 316.580, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 23.9

Other elements in 5ldz:

The structure of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase (pdb code 5ldz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase, PDB code: 5ldz:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5ldz

Go back to Chlorine Binding Sites List in 5ldz
Chlorine binding site 1 out of 3 in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl409

b:78.1
occ:1.00
 N B:LYS205 3.3 34.9 1.0
O B:HOH525 3.7 47.7 1.0
CA B:LYS204 3.8 37.2 1.0
CB B:LYS205 4.0 40.9 1.0
CG B:LYS205 4.0 62.3 1.0
C B:LYS204 4.1 37.8 1.0
CA B:LYS205 4.2 36.7 1.0
CB B:LYS204 4.3 40.9 1.0
CG B:LYS204 4.4 53.1 1.0

Chlorine binding site 2 out of 3 in 5ldz

Go back to Chlorine Binding Sites List in 5ldz
Chlorine binding site 2 out of 3 in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl407

b:78.5
occ:1.00
 O D:HOH573 2.9 61.7 1.0
N D:LYS205 3.3 41.7 1.0
CB D:LYS205 3.9 46.1 1.0
CA D:LYS204 3.9 38.0 1.0
C D:LYS204 4.1 43.6 1.0
CA D:LYS205 4.2 41.8 1.0
CB D:LYS204 4.3 40.9 1.0
CG D:LYS204 4.5 54.4 1.0

Chlorine binding site 3 out of 3 in 5ldz

Go back to Chlorine Binding Sites List in 5ldz
Chlorine binding site 3 out of 3 in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl407

b:73.1
occ:1.00
 N F:LYS205 3.5 40.6 1.0
CA F:LYS204 4.1 37.5 1.0
CG F:LYS205 4.1 58.7 1.0
CB F:LYS205 4.1 43.7 1.0
C F:LYS204 4.3 41.3 1.0
CA F:LYS205 4.5 40.5 1.0
CB F:LYS204 4.5 41.5 1.0
CG F:LYS204 4.6 52.2 1.0

Reference:

A.Ruf, T.Tetaz, B.Schott, C.Joseph, M.G.Rudolph. Quadruple Space-Group Ambiguity Owing to Rotational and Translational Noncrystallographic Symmetry in Human Liver Fructose-1,6-Bisphosphatase. Acta Crystallogr D Struct V. 72 1212 2016BIOL.
ISSN: ISSN 2059-7983
PubMed: 27841754
DOI: 10.1107/S2059798316016715
Page generated: Fri Jul 26 11:20:12 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy